View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_53 (Length: 259)
Name: NF14267_low_53
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_53 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 7753931 - 7753687
Alignment:
| Q |
14 |
cataaacatgggttgttctatttcaggaattttaccatgtacaatattaatacctggattatttttcataccagaatcaccaagatggttggtatggctc |
113 |
Q |
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| T |
7753931 |
cataaacatgggttgttctatttcaggaattttaccatgtacaatattaatacctggattatttttcataccagaatcaccaagatggttggtatggctt |
7753832 |
T |
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| Q |
114 |
gcttgcatttactaaacaaattttctacttttcatctctttatggtttacatgtccgatctagaaaaggaagaaacgaaacaccaacacattagattgaa |
213 |
Q |
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| T |
7753831 |
gcttgcatttactaaacaaattttctacttttcatctctttatggtttacatgtccgatctagaaaaggaagaaacgaaacaccaacaca-tatattgaa |
7753733 |
T |
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| Q |
214 |
ggggtgtccaacacgtgttagtatttgacaccaacaccacactaac |
259 |
Q |
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| T |
7753732 |
ggggtgtccaacacgtgttagtatttgacaccaacaccagactaac |
7753687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 32929242 - 32929326
Alignment:
| Q |
26 |
ttgttctatttcaggaattttaccatgtacaatattaatacctggattatttttcataccagaatcaccaagatggttggtatgg |
110 |
Q |
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| T |
32929242 |
ttgttctattacaggaattttgccttgtacagtattaatacccggattgtttttcataccagaatctcctagatggttggtatgg |
32929326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 32936975 - 32937047
Alignment:
| Q |
37 |
caggaattttaccatgtacaatattaatacctggattatttttcataccagaatcaccaagatggttggtatg |
109 |
Q |
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| T |
32936975 |
caggaattttaccatgtgcaatattaatacccgggttgtacttcattccagaatcacctagatggttggtatg |
32937047 |
T |
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