View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_low_56 (Length: 255)
Name: NF14267_low_56
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_56 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 44495420 - 44495192
Alignment:
| Q |
12 |
gaacctcagagccatgagcatctccaaatgaaatactgattctatctgttgtatattgtggagaacggcagcttgtttctatgatcaccttgtaattgca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495420 |
gaacctcagagccatgagcatctccaaatgaaatactgattctatctgttgtatattgtggagaacggcagcttgtttctatgatcaccttgtaattgca |
44495321 |
T |
|
| Q |
112 |
ggtgcctgtcggtctagtcattttatcctgattatcctgaaacatgcatatacaataacatataaccttttatttaaaatgcaaaaatatatgaaatttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495320 |
ggtgcctgtcggtctagtcattttatcctgattatcctgaaacatgcatatacaataacatataaccttttatttaaaatgcaaaaatatatgaaatttg |
44495221 |
T |
|
| Q |
212 |
gatacataaagcatttttatttacatttt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44495220 |
gatacataaagcatttttatttacatttt |
44495192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 44467758 - 44467658
Alignment:
| Q |
12 |
gaacctcagagccatgagcatctccaaatgaaatactgattctatctgttgtatattgtggagaacggcagcttgtttctatgatcaccttgtaattgca |
111 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||| |||| ||||| || ||||| |||||||||| ||||| |||||||||||| ||| |
|
|
| T |
44467758 |
gaacctcagagccatcagcatctccaaataaaatactgatttcatcttttgtagataaaggagatttgcagcttgttgctatggtcaccttgtaatcgca |
44467659 |
T |
|
| Q |
112 |
g |
112 |
Q |
| |
|
| |
|
|
| T |
44467658 |
g |
44467658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 44489323 - 44489248
Alignment:
| Q |
12 |
gaacctcagagccatgagcatctccaaatgaaatactgattctatctgttgtatattgtggagaacggcagcttgt |
87 |
Q |
| |
|
|||||| ||||||| || ||||||||||| ||| ||||||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
44489323 |
gaaccttagagccaagatcatctccaaataaaagactgatttgatctgttgtatatgctggagaattgcagcttgt |
44489248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University