View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_low_62 (Length: 246)
Name: NF14267_low_62
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_62 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 43440918 - 43440702
Alignment:
| Q |
15 |
aatattagcattgatgggcatgctgatatactgttaggcgtggagataagaaaatttgtaggaaagtgttggtgctttattggctatgaagtcattctat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43440918 |
aatattagcattgatgggcatgctgatatactgttaggcgtagagataagaaaatttgtaggaaactgttggtgctttattggctatgaagtcattctat |
43440819 |
T |
|
| Q |
115 |
aagtgatactagtttgtgtttggacattataatatgataatatgatgattagggtaaatgagcattgattctgtgagtgacaagccactctttatatcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43440818 |
aagtgatactagtttgtgtttggacattataatatgataatatgatgattagggtaaatgagcattgattctgtgagtgacaagccactctttatatcat |
43440719 |
T |
|
| Q |
215 |
tctatatttgcaaaaat |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43440718 |
tctatatttgcaaaaat |
43440702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 43743446 - 43743230
Alignment:
| Q |
15 |
aatattagcattgatgggcatgctgatatactgttaggcgtggagataagaaaatttgtaggaaagtgttggtgctttattggctatgaagtcattctat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43743446 |
aatattagcattgatgggcatgctgatatactgttaggcgtagagataagaaaatttgtaggaaactgttggtgctttattggctatgaagtcattctat |
43743347 |
T |
|
| Q |
115 |
aagtgatactagtttgtgtttggacattataatatgataatatgatgattagggtaaatgagcattgattctgtgagtgacaagccactctttatatcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43743346 |
aagtgatactagtttgtgtttggacattataatatgataatatgatgattagggtaaatgagcattgattctgtgagtgacaagccactctttatatcat |
43743247 |
T |
|
| Q |
215 |
tctatatttgcaaaaat |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43743246 |
tctatatttgcaaaaat |
43743230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University