View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_65 (Length: 242)
Name: NF14267_low_65
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 34361669 - 34361507
Alignment:
| Q |
66 |
agtccctatagcatcgttccggagtaagacgtgaaggtcttgaggcggagatggatggataaagcaaacattgttagaggaagctccgaattttgccatg |
165 |
Q |
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| T |
34361669 |
agtccctatagcatcgttccggagtaagacgtgaaggtcttgaggcggagatggatggataaagcaaacattgttagaggaagctccgaattttgccatg |
34361570 |
T |
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| Q |
166 |
aaatcagcacattggtttccttccctgaggcaatgttggatagagaaattgtgcgaggataat |
228 |
Q |
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| T |
34361569 |
aaatcagcacattggtttccttccctgaggcaatgttggatagagaaattgtgcgaggataat |
34361507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 1448436 - 1448314
Alignment:
| Q |
98 |
gaaggtcttgaggcggagatggatggataaagcaaacattgttagaggaagctccgaattttgccatgaaatcagcacattggtttccttccctgaggca |
197 |
Q |
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| T |
1448436 |
gaaggtcttgaggaggggatgggtggatgaggtactcatcattagacgaagctcccaattttgccatgaaatcaacgcattggtttccttcacagaggta |
1448337 |
T |
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| Q |
198 |
atgttggatagagaaattgtgcg |
220 |
Q |
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| T |
1448336 |
atggtggacagtgaaattgtgcg |
1448314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 26701609 - 26701766
Alignment:
| Q |
70 |
cctatagcatcgttccggagtaagacgtgaaggtcttgaggcggagatggatggataaagcaaacattgttagaggaagctccgaattttgccatgaaat |
169 |
Q |
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| T |
26701609 |
cctatagcatcattcctaagtaaaacgtgaaggtcttgaggaggagatggatggattaagcacacatcgttagaggaagcttcgaattttgccatgaaat |
26701708 |
T |
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| Q |
170 |
cagcacattggtttccttccctgaggcaatgttggatagagaaattgtgcgaggataa |
227 |
Q |
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| T |
26701709 |
cagcacattggtttccttctctgaggcaatgttggatagagaaattgtgcgaggataa |
26701766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 46954187 - 46954263
Alignment:
| Q |
145 |
gaagctccgaattttgccatgaaatcagcacattggtttccttccctgaggcaatgttggatagagaaattgtgcga |
221 |
Q |
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| T |
46954187 |
gaagctcctaattttgccatgaaatcagcgcattggtttccttcacggaggcaatgctggacagtgaaattgtgcga |
46954263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 11052992 - 11052835
Alignment:
| Q |
70 |
cctatagcatcgttccggagtaagacgtgaaggtcttgaggcggagatggatggataaagcaaacattgttagaggaagctccgaattttgccatgaaat |
169 |
Q |
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| T |
11052992 |
cctatagcatcattcctaagtaaatcgggaaggtcttgaggaggagatgagtggattaagcacacatcgttagaagaagctcctaattttgccatgaaat |
11052893 |
T |
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| Q |
170 |
cagcacattggtttccttccctgaggcaatgttggatagagaaattgtgcgaggataa |
227 |
Q |
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| T |
11052892 |
cagcgcattgttttccttctctgaggcaatgttggatagagaaattgtgcgaagataa |
11052835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 50234547 - 50234628
Alignment:
| Q |
139 |
ttagaggaagctccgaattttgccatgaaatcagcacattggtttccttccctgaggcaatgttggatagagaaattgtgcg |
220 |
Q |
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| T |
50234547 |
ttagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatggtggacagtgaaattgtgcg |
50234628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 32920234 - 32920303
Alignment:
| Q |
146 |
aagctccgaattttgccatgaaatcagcacattggtttccttccctgaggcaatgttggatagagaaatt |
215 |
Q |
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| T |
32920234 |
aagctcctaatttagccatgaagtcaacacattggtttccttctatgagacaatgctgaatagagaaatt |
32920303 |
T |
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