View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14267_low_67 (Length: 237)

Name: NF14267_low_67
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14267_low_67
NF14267_low_67
[»] chr5 (10 HSPs)
chr5 (9-237)||(15635810-15636038)
chr5 (182-237)||(9784806-9784861)
chr5 (179-237)||(13542424-13542482)
chr5 (180-237)||(32273830-32273887)
chr5 (182-233)||(606625-606676)
chr5 (182-237)||(8433953-8434008)
chr5 (182-237)||(19495218-19495273)
chr5 (192-237)||(14089972-14090017)
chr5 (180-219)||(2552273-2552312)
chr5 (185-220)||(33494967-33495002)
[»] chr3 (10 HSPs)
chr3 (182-237)||(31153597-31153652)
chr3 (180-237)||(49615597-49615654)
chr3 (179-237)||(28963518-28963576)
chr3 (182-237)||(7932567-7932622)
chr3 (187-237)||(376952-377002)
chr3 (191-237)||(3432757-3432803)
chr3 (182-230)||(51305704-51305752)
chr3 (187-237)||(7885808-7885858)
chr3 (182-235)||(42760817-42760870)
chr3 (187-219)||(53143393-53143425)
[»] chr8 (9 HSPs)
chr8 (179-237)||(8644259-8644317)
chr8 (182-237)||(6106958-6107013)
chr8 (182-237)||(31511532-31511587)
chr8 (182-237)||(44103982-44104037)
chr8 (180-237)||(67710-67767)
chr8 (182-237)||(7176897-7176952)
chr8 (182-237)||(40678818-40678873)
chr8 (199-237)||(7206851-7206889)
chr8 (180-237)||(14729121-14729178)
[»] chr4 (12 HSPs)
chr4 (184-237)||(6077772-6077825)
chr4 (178-237)||(37247410-37247469)
chr4 (182-236)||(38298391-38298445)
chr4 (180-237)||(3161956-3162013)
chr4 (180-233)||(40982672-40982725)
chr4 (182-237)||(37978171-37978226)
chr4 (182-237)||(43968581-43968636)
chr4 (182-236)||(2062217-2062271)
chr4 (179-237)||(22425234-22425292)
chr4 (187-235)||(53455283-53455331)
chr4 (190-232)||(55970002-55970044)
chr4 (197-237)||(52676690-52676730)
[»] chr2 (7 HSPs)
chr2 (182-237)||(5552570-5552625)
chr2 (180-237)||(9707487-9707544)
chr2 (180-237)||(12392227-12392284)
chr2 (182-237)||(44277533-44277587)
chr2 (182-218)||(9976858-9976894)
chr2 (195-237)||(449269-449311)
chr2 (187-237)||(43301808-43301858)
[»] chr7 (4 HSPs)
chr7 (180-237)||(5355759-5355816)
chr7 (193-237)||(42252096-42252140)
chr7 (188-219)||(29629211-29629242)
chr7 (187-220)||(25796034-25796067)
[»] chr1 (9 HSPs)
chr1 (182-237)||(32827108-32827163)
chr1 (187-220)||(33259674-33259707)
chr1 (187-220)||(33279833-33279866)
chr1 (190-237)||(33727115-33727162)
chr1 (187-237)||(7789582-7789632)
chr1 (182-236)||(19512736-19512790)
chr1 (187-237)||(31206543-31206593)
chr1 (192-237)||(42400864-42400909)
chr1 (182-237)||(5300278-5300331)
[»] chr6 (2 HSPs)
chr6 (200-237)||(32025885-32025922)
chr6 (187-237)||(31632541-31632591)
[»] scaffold0578 (1 HSPs)
scaffold0578 (182-236)||(10148-10202)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 15636038 - 15635810
Alignment:
Q  9 acatcatcaacgacttgggacaggctggaaggatccaggaggtgatagacgggataataggggttgtgaaggggttgggagtgaccattttctaaacaat 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||  ||||||| ||||||||||||||||| |||||||||    
T  15636038 acatcatcaaccacttgggacaggctggaaggatccaggaggtggtagatgggataataggggcggtgaaggtgttgggagtgaccatttcctaaacaat 15635939  T
Q  109 gatgagaatgaggacaaggctcgagctaactagatactcaaggacaagactgaggtggttgccaaggtgactaagagtatccacaatggtgaggtcttca 208  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||||||    
T  15635938 gatgagaacgaggacaaggctcaagctaacaagatactcaaggacaagattgaggtggttgcaagggtgactaagagcatccacaatggtgaggtcttca 15635839  T
Q  209 ccatttaagacctagcacctaataggtac 237  Q
    ||||||||||||||| |||||||||||||    
T  15635838 ccatttaagacctagtacctaataggtac 15635810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 9784861 - 9784806
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9784861 agagcatccacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 9784806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 13542482 - 13542424
Alignment:
Q  179 ctaagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  13542482 ctaagagcattcacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 13542424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 32273887 - 32273830
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||    
T  32273887 taagagtatccatattggtgaggtcttcaccatttaagacctagtacctaataggtac 32273830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 606676 - 606625
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaatag 233  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  606676 agagcatccacaatggtgaggtcttcaccatttaagacctagtacctaatag 606625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 8434008 - 8433953
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  8434008 agagcatccacaatggtgaggtcttcaccatttaagacctggtacctaataggtac 8433953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 19495273 - 19495218
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  19495273 agagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 19495218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 14090017 - 14089972
Alignment:
Q  192 caatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  14090017 caatggtgaggtcttcaccatttaagacctagtacctaataggtac 14089972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 2552273 - 2552312
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagac 219  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  2552273 taagagcatccacattggtgaggtcttcaccatttaagac 2552312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 33495002 - 33494967
Alignment:
Q  185 gtatccacaatggtgaggtcttcaccatttaagacc 220  Q
    |||||||||||||||||||||| |||||||||||||    
T  33495002 gtatccacaatggtgaggtcttaaccatttaagacc 33494967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 31153652 - 31153597
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31153652 agagcatccacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 31153597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 49615597 - 49615654
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  49615597 taagagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 49615654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 28963518 - 28963576
Alignment:
Q  179 ctaagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  28963518 ctaagagcatctacaatggtgagatcttcaccatttaagacctagtacctaataggtac 28963576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 7932622 - 7932567
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7932622 agagcatctacaatagtgaggtcttcaccatttaagacctagtacctaataggtac 7932567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 376952 - 377002
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  376952 atcctcaatggtgaggtcttcaccatttaagacctagtatctaataggtac 377002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 3432757 - 3432803
Alignment:
Q  191 acaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||    
T  3432757 acaatggtgaggtcttcaccatttaagacctagtacataataggtac 3432803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 51305704 - 51305752
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaa 230  Q
    |||| ||| |||||| |||||||||||||||||||||||||| ||||||    
T  51305704 agagcatctacaatgatgaggtcttcaccatttaagacctagtacctaa 51305752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 7885808 - 7885858
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| |||||||||||||||||||||||||||||    |||||||||||||    
T  7885808 atccccaatggtgaggtcttcaccatttaagacccgatacctaataggtac 7885858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 42760870 - 42760817
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggt 235  Q
    |||| |||||||||||||||||||||| ||||||| | |||| | |||||||||    
T  42760870 agagcatccacaatggtgaggtcttcatcatttaaaatctagtatctaataggt 42760817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 53143393 - 53143425
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagac 219  Q
    |||||||||||||||||||| ||||||||||||    
T  53143393 atccacaatggtgaggtcttaaccatttaagac 53143425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 8644259 - 8644317
Alignment:
Q  179 ctaagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  8644259 ctaagagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 8644317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 6106958 - 6107013
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  6106958 agagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 6107013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 31511587 - 31511532
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||| ||||||||||| |||||||||||||||| |||| |||||||||||||    
T  31511587 agagcatctacaatggtgagatcttcaccatttaagatctagtacctaataggtac 31511532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 44103982 - 44104037
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||||||| ||||||||||||||||||||||||| | | |||||||||||||    
T  44103982 agagcatccacattggtgaggtcttcaccatttaagacttggtacctaataggtac 44104037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 67767 - 67710
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||||||| | ||||||||||| ||||||||||||||||||| |  ||||||||||    
T  67767 taagagtatctataatggtgaggttttcaccatttaagacctagtagttaataggtac 67710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 7176952 - 7176897
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| |||||| | |||||||||||||||||||||||||| | | |||||||||||    
T  7176952 agagcatccactacggtgaggtcttcaccatttaagacctggtagctaataggtac 7176897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 40678818 - 40678873
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||||||||| ||||| | |||||||||||||| |||| |||||||||||||    
T  40678818 agagcatccacaatagtgagttattcaccatttaagatctagtacctaataggtac 40678873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 7206851 - 7206889
Alignment:
Q  199 gaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  7206851 gaggtcttcactatttaagacctagtacctaataggtac 7206889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 14729178 - 14729121
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||| ||||||||||| |||||||||| ||||||||| || | | |||||||||||    
T  14729178 taagagcatccacaatggcgaggtcttcatcatttaagatctggtatctaataggtac 14729121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 6077825 - 6077772
Alignment:
Q  184 agtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  6077825 agtatctacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 6077772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 37247469 - 37247410
Alignment:
Q  178 actaagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||    
T  37247469 actaagagcatccacaatggtgaggtcttcaccatttaagatctggtacctaataggtac 37247410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 38298391 - 38298445
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggta 236  Q
    |||| |||||||||||||||||||||||||||||||| |||| || |||||||||    
T  38298391 agagcatccacaatggtgaggtcttcaccatttaagatctagtacttaataggta 38298445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 3162013 - 3161956
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||| |||||||||| ||||||||||||||||||||| |||| |||||||| ||||    
T  3162013 taagagcatccacaatgttgaggtcttcaccatttaagatctagtacctaatatgtac 3161956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 40982672 - 40982725
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaatag 233  Q
    |||||| ||| || |||||||||||||||||||||||||||||| |||||||||    
T  40982672 taagagcatctacgatggtgaggtcttcaccatttaagacctagtacctaatag 40982725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 37978226 - 37978171
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||| |||||||||| |||||||||||||||||| ||| |||||||||||||    
T  37978226 agagcatctacaatggtgaagtcttcaccatttaagacttagtacctaataggtac 37978171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 43968636 - 43968581
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||| ||||||||||||||||||  ||||||||||||| |||||||||||||    
T  43968636 agagcatctacaatggtgaggtcttcattatttaagacctagtacctaataggtac 43968581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 2062217 - 2062271
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggta 236  Q
    |||||||| |||||||||||||||||||||||||||| || | || |||||||||    
T  2062217 agagtatctacaatggtgaggtcttcaccatttaagatctggtacttaataggta 2062271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 22425292 - 22425234
Alignment:
Q  179 ctaagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||| ||||||||| |||||||||||||||||||||||||   | |||||||||||    
T  22425292 ctaagagcatccacaatagtgaggtcttcaccatttaagacctgatatctaataggtac 22425234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 53455331 - 53455283
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacctagcacctaataggt 235  Q
    ||||||||||||||| | ||||||||||||||||| | |||||||||||    
T  53455331 atccacaatggtgagattttcaccatttaagacctggtacctaataggt 53455283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 55970002 - 55970044
Alignment:
Q  190 cacaatggtgaggtcttcaccatttaagacctagcacctaata 232  Q
    |||| ||||||||||||||||||||||||||| | ||||||||    
T  55970002 cacattggtgaggtcttcaccatttaagacctggtacctaata 55970044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 52676730 - 52676690
Alignment:
Q  197 gtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| |||||||||||||||||||||| || ||||||||||    
T  52676730 gtgatgtcttcaccatttaagacctagtacgtaataggtac 52676690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 5552625 - 5552570
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  5552625 agagcatctacaatggtgaggtcttcaccatttaagacctagtacctaataggtac 5552570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 9707544 - 9707487
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||||    
T  9707544 taagagcatcaagaatggtgaggtcttcaccatttaagacctagtacctaataggtac 9707487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 12392284 - 12392227
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||    
T  12392284 taagagcatccataatggtgaggtcttccccatttaagacctagtacctaataggtac 12392227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 44277533 - 44277587
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  44277533 agagcatccacaatggtgag-tcttcaccatttaagacctagtacctaataggtac 44277587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 9976894 - 9976858
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaaga 218  Q
    |||| ||||||||||||||||||||||||||||||||    
T  9976894 agagcatccacaatggtgaggtcttcaccatttaaga 9976858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 449311 - 449269
Alignment:
Q  195 tggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| |||||||||||||||||||||| | |||||||||||||    
T  449311 tggtaaggtcttcaccatttaagacctggtacctaataggtac 449269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 43301808 - 43301858
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||| |||||||||||||| ||||||||||||   |||||||||||||    
T  43301808 atccacattggtgaggtcttcatcatttaagaccttatacctaataggtac 43301858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 5355759 - 5355816
Alignment:
Q  180 taagagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||| | |||||||||||    
T  5355759 taagagcatccacaatcgtgagatcttcaccatttaagacctagtaactaataggtac 5355816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 42252096 - 42252140
Alignment:
Q  193 aatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||    
T  42252096 aatggtgaggtcttcaccatttaagatatagtacctaataggtac 42252140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 219
Target Start/End: Original strand, 29629211 - 29629242
Alignment:
Q  188 tccacaatggtgaggtcttcaccatttaagac 219  Q
    ||||||||||||||||||||||||||||||||    
T  29629211 tccacaatggtgaggtcttcaccatttaagac 29629242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 25796067 - 25796034
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacc 220  Q
    |||||||||||||||||||| |||||||||||||    
T  25796067 atccacaatggtgaggtcttaaccatttaagacc 25796034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 32827108 - 32827163
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| |||||| |||||||||||||||||||||||||||||| | |||||| ||||    
T  32827108 agagcatccaccatggtgaggtcttcaccatttaagacctagtatctaatatgtac 32827163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 33259707 - 33259674
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacc 220  Q
    ||||||||||||||||||||||||||||||||||    
T  33259707 atccacaatggtgaggtcttcaccatttaagacc 33259674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 33279866 - 33279833
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacc 220  Q
    ||||||||||||||||||||||||||||||||||    
T  33279866 atccacaatggtgaggtcttcaccatttaagacc 33279833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 33727162 - 33727115
Alignment:
Q  190 cacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||||||| ||||||||||||||| || ||| |||||||||||||    
T  33727162 cacaatggtgaagtcttcaccatttaaaacatagtacctaataggtac 33727115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 7789582 - 7789632
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||| |||| ||||||| ||||||||||||| || |||||||||||||    
T  7789582 atccacattggtaaggtctttaccatttaagacccagtacctaataggtac 7789632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 19512736 - 19512790
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggta 236  Q
    |||| ||||||||||| |||||||||||||||||||| ||   ||||||||||||    
T  19512736 agagcatccacaatggcgaggtcttcaccatttaagatctgatacctaataggta 19512790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 31206593 - 31206543
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||| ||||||||||||| |||||||||||||   |||||||||||||    
T  31206593 atccacattggtgaggtcttccccatttaagacctgttacctaataggtac 31206543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 42400864 - 42400909
Alignment:
Q  192 caatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    ||||||||||||||||| |||||||||||  | |||||||||||||    
T  42400864 caatggtgaggtcttcatcatttaagacccggtacctaataggtac 42400909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 5300278 - 5300331
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||||||||||||||||||||||| |  |||||||| | |||||||||||||    
T  5300278 agagcatccacaatggtgaggtcttcacaa--taagaccttgtacctaataggtac 5300331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 32025922 - 32025885
Alignment:
Q  200 aggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32025922 aggtcttcaccatttaagacctagtacctaataggtac 32025885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 31632591 - 31632541
Alignment:
Q  187 atccacaatggtgaggtcttcaccatttaagacctagcacctaataggtac 237  Q
    |||| ||||||||||||||||| ||||||||||| || || ||||||||||    
T  31632591 atcctcaatggtgaggtcttcatcatttaagacccagtacttaataggtac 31632541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 10202 - 10148
Alignment:
Q  182 agagtatccacaatggtgaggtcttcaccatttaagacctagcacctaataggta 236  Q
    |||| ||||||||||| |||||||||||||||||||| ||   ||||||||||||    
T  10202 agagcatccacaatggcgaggtcttcaccatttaagatctgatacctaataggta 10148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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