View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_low_68 (Length: 235)
Name: NF14267_low_68
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_68 |
 | |
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| [»] scaffold0018 (2 HSPs) |
| | |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 24897624 - 24897424
Alignment:
| Q |
15 |
atcttcttcatggtattctagtgcaaactttcttcggaataggaatttaaactttctgaactccttattcatttctatgaagtgtgttctacatccaaca |
114 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
24897624 |
atcttcttcagggtattctagtgcaaactttcttcggaataggaatttaaactttctgaaagccttattcatttctatgaagtgtgttctaaatccaaca |
24897525 |
T |
|
| Q |
115 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccacacagaacctttttccatcaaaccta |
214 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
24897524 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcatccgggataatccacaccgaacctttttccatcaaaccta |
24897425 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
24897424 |
t |
24897424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 24909727 - 24909527
Alignment:
| Q |
15 |
atcttcttcatggtattctagtgcaaactttcttcggaataggaatttaaactttctgaactccttattcatttctatgaagtgtgttctacatccaaca |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24909727 |
atcttcttcagggtattctagtgcaaactttcttcggaataggaatttaaactttctgaaacccttattcatttctatgaagtgtgttctaaatccaaca |
24909628 |
T |
|
| Q |
115 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccacacagaacctttttccatcaaaccta |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
24909627 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccataccgaacctttttccatcaaaccta |
24909528 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
24909527 |
t |
24909527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 24987230 - 24987030
Alignment:
| Q |
15 |
atcttcttcatggtattctagtgcaaactttcttcggaataggaatttaaactttctgaactccttattcatttctatgaagtgtgttctacatccaaca |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24987230 |
atcttcttcagggtattctagtgcaaactttctttggaataggaatttaaactttctgaaagccttattcatttctatgaagtgtgttctaaatccaaca |
24987131 |
T |
|
| Q |
115 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccacacagaacctttttccatcaaaccta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24987130 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccacaccgaacctttttccatcaaaccta |
24987031 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
24987030 |
t |
24987030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 140299 - 140099
Alignment:
| Q |
15 |
atcttcttcatggtattctagtgcaaactttcttcggaataggaatttaaactttctgaactccttattcatttctatgaagtgtgttctacatccaaca |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||| || || ||||||||| || ||||||||| || |||||||| |
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|
| T |
140299 |
atcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaaca |
140200 |
T |
|
| Q |
115 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccacacagaacctttttccatcaaaccta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||| | |||||||||||||||||||||| |
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|
| T |
140199 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaacttcattcgggataatccacgccgaacctttttccatcaaaccta |
140100 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
140099 |
t |
140099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 148908 - 148708
Alignment:
| Q |
15 |
atcttcttcatggtattctagtgcaaactttcttcggaataggaatttaaactttctgaactccttattcatttctatgaagtgtgttctacatccaaca |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||| || || ||||||||| |||||| ||||| || |||||||| |
|
|
| T |
148908 |
atcttcttcagggtattctagtgcaaactttctttggaatttcaatttcaattttctaaaggtctcattcatttccatgaagcgtgttttaaatccaaca |
148809 |
T |
|
| Q |
115 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccacacagaacctttttccatcaaaccta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||| | |||||||||||||||||||||| |
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|
| T |
148808 |
acaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaacttcatttgggataatccacgccgaacctttttccatcaaaccta |
148709 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
148708 |
t |
148708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 23368 - 23159
Alignment:
| Q |
15 |
atcttcttcatggta-ttctagtgcaaacttt-cttcgg-aataggaattt-aaactttctgaactcctt-attcatttct-atgaagtg-tgttctaca |
107 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||| || ||||||||||| |||||| |||| |||| |||||||||| |||||||| ||||||| | |
|
|
| T |
23368 |
atcttcttcagggtagttctagtgcaaacttttctttggtaataggaattttaaacttcttgaaagcctttattcatttcttatgaagtggtgttctaaa |
23269 |
T |
|
| Q |
108 |
tccaacaacacctt-gcatgttgaagataacagaagagttaa-ctgaatcaa-gtaggccagcaacctcgtccgggataatccacacagaacc-tttttc |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
23268 |
tccaacaacaccttagcatgttgaagataacagaagagttaaactgaatcaaagtaggccagcaacctcgtccgggataatccacaccgaaccttttttc |
23169 |
T |
|
| Q |
204 |
catcaaacct |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
23168 |
catcaaacct |
23159 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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