View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_72 (Length: 232)
Name: NF14267_low_72
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28893853 - 28893627
Alignment:
| Q |
1 |
aagttagtgttatatttgtcttcaactc-aagagatttcacctttttatgtgatatatttatttatttactttcctagcattgttgttatagaacactgc |
99 |
Q |
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| T |
28893853 |
aagttagtgttatatttgtcttcaactctaagagatttcaccattttatgtgatatatttatttatttactttcctagcattgttgttatagaacactgc |
28893754 |
T |
|
| Q |
100 |
actggaattggcaacctcgtataaatttttaaacctgtgttggtttgttgcgattaaattcattcttatttatgttttcttggtctgttcatgagtaaga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
28893753 |
actggaattggcaacctcgtataaatttttaaacctgtgttggtttgttgcgattaaattcattcttttttatgttttctttgtctgttcatgagtaaga |
28893654 |
T |
|
| Q |
200 |
gaataaggtaagatgcattttaattct |
226 |
Q |
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||||| || || ||||||||||||||| |
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| T |
28893653 |
gaatatggcaaaatgcattttaattct |
28893627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 28926879 - 28926702
Alignment:
| Q |
1 |
aagttagtgttatatttgtcttcaactc-aagagatttcacctttttatgtgatatatttatttatttactttcctagcattgttgttatagaacactgc |
99 |
Q |
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||||| ||||||| ||| |||||||||| ||| |||| || ||||||||||||||||||||||| || || ||||||| ||| |||| ||||| |
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| T |
28926879 |
aagttggtgttatgtttctcttcaactctaagggattatac-tttttatgtgatatatttatttagttgct-----agcattgctgt---agaaaactgc |
28926789 |
T |
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| Q |
100 |
actggaattggcaacctcgtataaatttttaaacctgtgttggtttgttgcgattaaattcattcttatttatgttttcttggtctgttc |
189 |
Q |
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| T |
28926788 |
accagaattgacaacctcgta-aactttttaaacc-gtgttggtt-gttgcgattaaattcattctttattatgttttctttgtctgttc |
28926702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 28917576 - 28917423
Alignment:
| Q |
41 |
ctttttatgtgatatatttatttatttactttcctagcattgttgttatagaacactgcactggaattggcaacctcgtataaatttttaaacctgtgtt |
140 |
Q |
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||||||||||||||||||||||||||| ||| |||| |||||| ||||||||| || ||||| |||||||| ||| || ||| ||||||||| |
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| T |
28917576 |
ctttttatgtgatatatttatttattt----tcccagcactgttgt---agaacactgtaccggaataggcaaccttgta--aactttataacctgtgta |
28917486 |
T |
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| Q |
141 |
ggtttgttgcgattaaattcattcttatttatgttttcttggtctgttcatgagtaagagaata |
204 |
Q |
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|||| |||| |||||||||||||||| ||||||||||||| || ||||| || |||||||||| |
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| T |
28917485 |
ggtt-gttgtgattaaattcattcttttttatgttttctttgtatgttcttgtttaagagaata |
28917423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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