View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14267_low_75 (Length: 222)

Name: NF14267_low_75
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14267_low_75
NF14267_low_75
[»] chr1 (5 HSPs)
chr1 (8-222)||(46471229-46471443)
chr1 (21-222)||(46466034-46466238)
chr1 (32-222)||(46451658-46451848)
chr1 (81-222)||(46344708-46344849)
chr1 (81-222)||(46462675-46462816)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 46471229 - 46471443
Alignment:
Q  8 agagtaggaatgtaaagtactgattttggtcaaaattaatgagaccttctaaatgattaatgatgattatataatggcagataagcacaaagttttcgga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46471229 agagtaggaatgtaaagtactgattttggtcaaaattaatgagaccttctaaatgattaatgatgattatataatggcagataagcacaaagttttcgga 46471328  T
Q  108 tttgatggcttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgcaatgggggtggaattagcaaaagggcag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46471329 tttgatggcttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgcaatgggggtggaattagcaaaagggcag 46471428  T
Q  208 ggtttgttcgatcaa 222  Q
    |||||||||||||||    
T  46471429 ggtttgttcgatcaa 46471443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 46466034 - 46466238
Alignment:
Q  21 aaagtactgattttggtcaaaattaatgagaccttctaaatga----ttaatgatgattatataatggcagataagcacaaagttttcggatttgatggc 116  Q
    |||||| |||||||||||||||||| ||||| ||| |  ||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46466034 aaagtattgattttggtcaaaatta-tgagatctttttgatgaataattaatgatgattatataatggcagataagcacaaagttttcggatttgatggc 46466132  T
Q  117 ttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgcaatgggggtggaattagcaaaagggcagggtttgttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46466133 ttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgcaatgggggtggaattagcaaaagggcagggtttgttc 46466232  T
Q  217 gatcaa 222  Q
    ||||||    
T  46466233 gatcaa 46466238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 46451658 - 46451848
Alignment:
Q  32 tttggtcaaaattaatgagaccttctaaatgattaatgatgattatataatggcagataagcacaaagttttcggatttgatggcttttggtggggcagc 131  Q
    ||||||||||||| |||||||| | | ||| | |||||||||| |||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  46451658 tttggtcaaaatttatgagacccttttaataaataatgatgatgataatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagc 46451757  T
Q  132 acctgaaagaatcaatggaaggttggctatgattggttttgtatctgcaatgggggtggaattagcaaaagggcagggtttgttcgatcaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||| ||||||    
T  46451758 acctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaa 46451848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 46344849 - 46344708
Alignment:
Q  81 atggcagataagcacaaagttttcggatttgatggcttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgca 180  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  46344849 atggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacctgaaagaatcaatggaaggttggctatgattggttttgtagcagca 46344750  T
Q  181 atgggggtggaattagcaaaagggcagggtttgttcgatcaa 222  Q
    |||||||||||| |||||||||| ||||||||||| ||||||    
T  46344749 atgggggtggaaatagcaaaaggacagggtttgtttgatcaa 46344708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 46462675 - 46462816
Alignment:
Q  81 atggcagataagcacaaagttttcggatttgatggcttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgca 180  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  46462675 atggcagatgagcacaaaattttcggatttgatggcttttggtgggccagcacctgaaagaatcaatggaaggttggctatgattggttttgtagcagca 46462774  T
Q  181 atgggggtggaattagcaaaagggcagggtttgttcgatcaa 222  Q
    |||||||||||| |||||||||| ||||||||||| ||||||    
T  46462775 atgggggtggaaatagcaaaaggacagggtttgtttgatcaa 46462816  T

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