View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_76 (Length: 213)
Name: NF14267_low_76
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 50993562 - 50993384
Alignment:
| Q |
23 |
tcctcaactcaacgttcatcaaccaaaacgactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgcccca |
122 |
Q |
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| T |
50993562 |
tcctcaactcaacgttcatcaaccaaaacgactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgcccca |
50993463 |
T |
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| Q |
123 |
tcgcttcttacactgaatcggtgtccggttcacaccatgcttctcacagtacgaagagaccaacgtccacttcatctca |
201 |
Q |
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| T |
50993462 |
tcgcttcttacactgaatcggtgtccggttcacaccatgcttctcacagtacgaagagaccaacgtccacttcttctca |
50993384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 187
Target Start/End: Original strand, 6526936 - 6527085
Alignment:
| Q |
38 |
tcatcaaccaaaacgactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgccccatcgcttcttacactg |
137 |
Q |
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||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||| ||| ||| |||| ||| |||||| ||||||| |
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| T |
6526936 |
tcatcaaccaaaacgactccgtttcatctctcacctgactctcccactcctttatcttcttataatctccggcgaggttgctccaccgcttcctacactg |
6527035 |
T |
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| Q |
138 |
aatcggtgtccggttcacaccatgcttctcacagtacgaagagaccaacg |
187 |
Q |
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| T |
6527036 |
aatcggaccccggttcacaccgtgtttcttacaatacgaagaaaccaacg |
6527085 |
T |
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