View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_77 (Length: 210)
Name: NF14267_low_77
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 17079581 - 17079398
Alignment:
| Q |
10 |
aagaatatcatcgctatattcactaatataaagaaagctttgatttatgatccttagaatattaacacttaattttcatcatgcaatacctcccttatta |
109 |
Q |
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| T |
17079581 |
aagaatatcatcgctatattcactaatataaagaaagctttgatttatgatccttagaatattaacacttaattttcatcatgcaatacctcccttatta |
17079482 |
T |
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| Q |
110 |
ttcacttgcatgagtagaaaaataatgttaggatataggataatagctaattagtgtagttaacgtagttaagagttcttgttc |
193 |
Q |
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| T |
17079481 |
ttcacttgcattagtagaaaaataatgttaggatataggataatagctaattagtgtagttaaagtagttaagagttcttgttc |
17079398 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 16502241 - 16502292
Alignment:
| Q |
135 |
tgttaggatataggataatagctaattagtgtagttaacgtagttaagagtt |
186 |
Q |
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| T |
16502241 |
tgttaggatatattataatggccaattagtgtagttaaagtagttaagagtt |
16502292 |
T |
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