View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_8 (Length: 564)
Name: NF14267_low_8
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 30619661 - 30620199
Alignment:
| Q |
13 |
cataggctctagctgccttttcttctttgtcataacctcctacaaa-agtatataaaccaacatcaacaaattaacactcttgaaaagaataaaataaaa |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30619661 |
cataggctctagctgctttttcttctttgtcataacctcctacaaatagtacataaaccaacatcaacaaataaacactcttgaaaagaataaaataaaa |
30619760 |
T |
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| Q |
112 |
atttcatagaggaaatcatatcccactcacccaagtaaactgcaaaaccatgtacattgatgaagaccatagaggaaaatggcatgcaaagaacaaaagc |
211 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30619761 |
atttcataga----atcatatcccactcacccaagtaaactgcaaaaccatgtacattgatgaagaccatagaggaaaatggcatgcaaagaacaaaagc |
30619856 |
T |
|
| Q |
212 |
aattgttaagtaataataatagtatatatttcacttaatcaatgttattaataaa----aaatacaacagggaacataaatttgtagatctaattacctt |
307 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30619857 |
aattgttaagtaatagta---gtatatatttcacttaatcaatgttattaataaattaaaaatacaacagggaacataaatttgtagatctaattacctt |
30619953 |
T |
|
| Q |
308 |
gccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgccttcaatcaattcaaaactc |
407 |
Q |
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| T |
30619954 |
gccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgccttcaatcaattcaaaactc |
30620053 |
T |
|
| Q |
408 |
taaaactcaccatcatgcatctcaaaaatagaaaggctaagttcttttttctttaaaatagcatagaaaatacttataggtttttattcatacaatgag- |
506 |
Q |
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| T |
30620054 |
t-aaactcaccatcatgcatctcaaaaatagaaaggctaagttcttttttctttaaaatagcaaagaaaatacttataggtttttattgatacaataaga |
30620152 |
T |
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| Q |
507 |
---aataaataaataaatgtttttgatgttaaaatagagaaccttgt |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30620153 |
ataaataaataaataaatgtttttgatgttaaaatagagaaccttgt |
30620199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 7210527 - 7210439
Alignment:
| Q |
301 |
ttaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgcct |
389 |
Q |
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| T |
7210527 |
ttaccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcatatctcccagtccatctatgcct |
7210439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 41965262 - 41965314
Alignment:
| Q |
334 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
386 |
Q |
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| T |
41965262 |
cttctacaagtattatcccaaaggtgagcttcataccttccggtccatctatg |
41965314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 13683511 - 13683569
Alignment:
| Q |
331 |
tctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgcct |
389 |
Q |
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| T |
13683511 |
tctcttctacagctgttatcccatagatgggcttcatatcttcctgtccatctatgcct |
13683569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 5178479 - 5178564
Alignment:
| Q |
301 |
ttaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
386 |
Q |
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||||||||| ||||||| | || || |||||| || |||| || |||||||| || |||||||||||||| |||||||| ||||| |
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| T |
5178479 |
ttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatg |
5178564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 24563155 - 24563207
Alignment:
| Q |
334 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
386 |
Q |
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|||||||| || ||||||||||||||||||||||| || || ||||||||||| |
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| T |
24563155 |
cttctacagctgttatcccaaaggtgagcttcataccttccagtccatctatg |
24563207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 53235953 - 53236005
Alignment:
| Q |
334 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
386 |
Q |
| |
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||||| |||||||| ||||| || || |||||||||||||| ||||||||||| |
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| T |
53235953 |
cttctgcaactattgtcccatagatgtgcttcatatctccccgtccatctatg |
53236005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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