View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14268_high_12 (Length: 220)
Name: NF14268_high_12
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14268_high_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 23178307 - 23178086
Alignment:
| Q |
1 |
aaattttagacttcatatcttctgaaattcgaacaggacgatagtttttatcaagcctcactacggtgattttggcttccaaaacaggctgtcattaaat |
100 |
Q |
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| T |
23178307 |
aaattttagacttcatatcttctgaaattcgaagaggacgatagtttttatcaagcctcactacggtggttttggcttccaaaacaggctgtcattaaat |
23178208 |
T |
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| Q |
101 |
tcaacaaaaatcaacatatattagagaaatgatatttgt--nnnnnnnnnnttgaaaaagtaaaggataaaatcaaacctcgtgatttggtagcttatag |
198 |
Q |
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| T |
23178207 |
tcaacaaaaatcaacatatattagagaaatgatatttgtacaaaaaaaaaaattaaaaagtaaaggataaaatcaaaccttgtgatttggtagcttatag |
23178108 |
T |
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| Q |
199 |
atgaactgatcaaagtataaac |
220 |
Q |
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| T |
23178107 |
atgaactgatcaaggtataaac |
23178086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 23223643 - 23223552
Alignment:
| Q |
5 |
tttagacttcatatcttctgaaattcgaacaggacgatagtttttatcaagcctcactacggtgattttggcttccaaaacaggctgtcatt |
96 |
Q |
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||||||||| |||||| | | |||||||| ||||||||||||||| ||||||| |||| | ||| ||||||||||||| ||||||||||| |
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| T |
23223643 |
tttagacttaatatctgccggaattcgaataggacgatagtttttgtcaagccacactgctgtggccttggcttccaaaataggctgtcatt |
23223552 |
T |
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