View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14268_high_4 (Length: 523)

Name: NF14268_high_4
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14268_high_4
NF14268_high_4
[»] chr2 (5 HSPs)
chr2 (132-474)||(32257879-32258221)
chr2 (1-65)||(32257748-32257812)
chr2 (1-66)||(32257668-32257733)
chr2 (336-436)||(15030272-15030371)
chr2 (462-497)||(32258238-32258273)
[»] scaffold0390 (6 HSPs)
scaffold0390 (132-456)||(1-325)
scaffold0390 (132-261)||(5251-5380)
scaffold0390 (1-66)||(391-456)
scaffold0390 (1-66)||(5446-5511)
scaffold0390 (1-66)||(471-536)
scaffold0390 (1-66)||(5526-5591)
[»] chr4 (3 HSPs)
chr4 (132-474)||(1067059-1067398)
chr4 (1-65)||(1066126-1066190)
chr4 (462-497)||(1067415-1067450)
[»] chr1 (1 HSPs)
chr1 (132-465)||(35240807-35241140)
[»] chr6 (4 HSPs)
chr6 (132-465)||(11927674-11928008)
chr6 (386-474)||(25342911-25342999)
chr6 (386-474)||(2966028-2966116)
chr6 (462-497)||(25343016-25343051)
[»] scaffold0786 (3 HSPs)
scaffold0786 (132-261)||(1663-1792)
scaffold0786 (1-65)||(1859-1923)
scaffold0786 (1-66)||(1938-2003)


Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 132 - 474
Target Start/End: Original strand, 32257879 - 32258221
Alignment:
132 ttattttaacagcaaaaattgaaatgatactacaaaggattgaaatgcattaactgaattaataagagtagaaatcttacatttgaggcattatttatag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
32257879 ttattttaacagcaaaaattgaaatgatactacaaaggattgaaatgcattaactggattaataagagtagaaatcttacatttgaggcattatttatag 32257978  T
232 taaaagcatgattaaagaacaactcaaaagcttacatttgatacaaagttcaatactgtaaaaaccatacatatatttcctcttctatttacttttttca 331  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
32257979 taaaagcatgattaaagaacaactcaaaagcttacaattgatacaaagttcaatactgtaacaaccatacatatatttcctcttctatttacttttttca 32258078  T
332 acataaaaaagacatagcttaacctcaaataatgatatgtgccctccttgatttaaaacaaaggtcaagtaactatacttgacatgatttcaaattggaa 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
32258079 acataaaaaagacatagcttaacctcaaataatgatatgtgccctccttgatttaaaacaaaggtgaagtaactatacttgacatgatttcaaattggaa 32258178  T
432 ttggtaagttccaacgggctgcttaactacacaatggagaatg 474  Q
    |||||||||||||||||||||||||||||||||||||||||||    
32258179 ttggtaagttccaacgggctgcttaactacacaatggagaatg 32258221  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32257748 - 32257812
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgac 65  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32257748 cataagagtaatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgac 32257812  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32257668 - 32257733
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgacc 66  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
32257668 cataagagtgatagtagtgattgatatggagaaaaataaaaccaacacaaatacatttccttgacc 32257733  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 436
Target Start/End: Original strand, 15030272 - 15030371
Alignment:
336 aaaaaagacatagcttaacctcaaataatgatatgtgccctccttgatttaaaa-caaaggtcaagtaactatacttgacatgatttcaaattggaattg 434  Q
    ||||||||||||  ||||| ||||||||||||  |||| |||| |||||||||| |||| || || | ||||||||||||||  ||||||||||||||||    
15030272 aaaaaagacatatattaacttcaaataatgat--gtgcactccctgatttaaaaacaaatgttaattcactatacttgacatagtttcaaattggaattg 15030369  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 497
Target Start/End: Original strand, 32258238 - 32258273
Alignment:
462 acaatggagaatgacagttattgaacttgaataatc 497  Q
    ||||||||||||||||||||||||||||||||||||    
32258238 acaatggagaatgacagttattgaacttgaataatc 32258273  T

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Target: scaffold0390 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 132 - 456
Target Start/End: Complemental strand, 325 - 1
Alignment:
132 ttattttaacagcaaaaattgaaatgatactacaaaggattgaaatgcattaactgaattaataagagtagaaatcttacatttgaggcattatttatag 231  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
325 ttattttaacagcaaaaattgaaatgatactacaaaggattggaatgcattaactggattaataagagtagaaatcttacatttgaggcattatttatag 226  T
232 taaaagcatgattaaagaacaactcaaaagcttacatttgatacaaagttcaatactgtaaaaaccatacatatatttcctcttctatttacttttttca 331  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
225 taaaagcatgattaaagaacaactcaaaagcttacaattgatacaaagttcaatactgtaacaaccatacatatatttcctcttctatttacttttttca 126  T
332 acataaaaaagacatagcttaacctcaaataatgatatgtgccctccttgatttaaaacaaaggtcaagtaactatacttgacatgatttcaaattggaa 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
125 acataaaaaagacatagcttaacctcaaataatgatatgtgccctccttgatttaaaacaaaggtgaagtaactatacttgacatgatttcaaattggaa 26  T
432 ttggtaagttccaacgggctgctta 456  Q
    |||||||||||||||||||||||||    
25 ttggtaagttccaacgggctgctta 1  T

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Target: scaffold0390; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 5380 - 5251
Alignment:
132 ttattttaacagcaaaaattgaaatgatactacaaaggattgaaatgcattaactgaattaataagagtagaaatcttacatttgaggcattatttatag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
5380 ttattttaacagcaaaaattgaaatgatactacaaaggattgaaatgcattaactggattaataagagtagaaatcttacatttgaggcattatttatag 5281  T
232 taaaagcatgattaaagaacaactcaaaag 261  Q
    ||||| ||||||||||||||||||||||||    
5280 taaaaacatgattaaagaacaactcaaaag 5251  T

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Target: scaffold0390; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 456 - 391
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgacc 66  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
456 cataagagtcatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgacc 391  T

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Target: scaffold0390; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5511 - 5446
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgacc 66  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5511 cataagagtcatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgacc 5446  T

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Target: scaffold0390; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 536 - 471
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgacc 66  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
536 cataagagtgatagtagtgattgatatggagaaaaataaaaccaacacaaatacatttccttgacc 471  T

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Target: scaffold0390; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5591 - 5526
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgacc 66  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
5591 cataagagtgatagtagtgattgatatggagaaaaataaaaccaacacaaatacatttccttgacc 5526  T

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Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 132 - 474
Target Start/End: Original strand, 1067059 - 1067398
Alignment:
132 ttattttaacagcaaaaattgaaatga-tactacaaaggattgaaatgcattaactgaattaataagagtagaaatcttacatttgaggcattatttata 230  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
1067059 ttattttaacagcaaaaattgaaatgaatactacaaaggattgaaatgcattaactggattaataagagtagaaatcttacatttgaggcattatttata 1067158  T
231 gtaaaagcatgattaaagaacaactcaaaagcttacatttgatacaaagttcaatactgtaaaaaccatacatatatttcctcttctatttacttttttc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||    
1067159 gtaaaagcatgattaaagaacaactcaaaagcttacatttgatacaaagttcaatactgtaacaaccatacatatatttcctcttctctttactcttttc 1067258  T
331 aacataaaaaagacatagcttaacctcaaataatgatatgtgccctccttgatttaaaacaaaggtcaagtaactatacttgacatgatttcaaattgga 430  Q
    |||||||||||||||||  |||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
1067259 aacataaaaaagacata--ttaacctcaaataatgata--tgccctccttggtttaaaacaaaggtcaagtaactataattgacatgatttcaaattgga 1067354  T
431 attggtaagttccaacgggctgcttaactacacaatggagaatg 474  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||    
1067355 attggtaagttccaacgggcagcttaaatacacaatgaagaatg 1067398  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1066126 - 1066190
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgac 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
1066126 cataagagtgatagcagtgattgatatggagaataataaaaccaacacaaatacatttccttgac 1066190  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 497
Target Start/End: Original strand, 1067415 - 1067450
Alignment:
462 acaatggagaatgacagttattgaacttgaataatc 497  Q
    |||||||||||||||| |||||||||||||||||||    
1067415 acaatggagaatgacaattattgaacttgaataatc 1067450  T

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Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 132 - 465
Target Start/End: Original strand, 35240807 - 35241140
Alignment:
132 ttattttaacagcaaaaattgaaatgatactacaaaggattgaaatgcattaactgaattaataagagtagaaatcttacatttgaggcattatttatag 231  Q
    |||||||||||||||||| || ||  ||  ||||  |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||    
35240807 ttattttaacagcaaaaactgtaacaatcttacattggattgaaatgcattaactggatttataagagtagaaatcttacatttgatgcattatttatag 35240906  T
232 taaaagcatgattaaagaacaa-ctcaaaagcttacatttgatacaaagttcaatactgtaaaaaccatacatatatttcctcttctatttacttttttc 330  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |||||| |||||    
35240907 taaaagcatgattaaagaacaaactcaaaagcttacatttgatacaaagttcaaaactgtaacaaccatacatatattacctcttctctttactcttttc 35241006  T
331 aacataaaaaagacatagcttaacctcaaataatgatatgtgccctccttgattt-aaaacaaaggtcaagtaactatacttgacatgatttcaaattgg 429  Q
    || ||||||||||||||  ||||| ||||||||||  |||||  ||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||    
35241007 aatataaaaaagacatatattaacttcaaataatg--atgtgttctccttgatttaaaaaaaaaggttaagtaactatactttacatgatttcaaattgg 35241104  T
430 aattggtaagttccaacgggctgcttaactacacaa 465  Q
    |||||||||||||||||||| |||||||||||||||    
35241105 aattggtaagttccaacgggatgcttaactacacaa 35241140  T

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Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 132 - 465
Target Start/End: Original strand, 11927674 - 11928008
Alignment:
132 ttattttaacagcaaaaatt--gaaatga-tactacaaaggattgaaatgcattaactgaattaataagagtagaaatcttacatttgaggcattattta 228  Q
    ||||||||| |||||||| |  ||||||| |||||||| |||||||||||||||||| | | | ||||||||||||||||||||||||| ||||||||||    
11927674 ttattttaatagcaaaaaattcgaaatgaatactacaatggattgaaatgcattaaccggaattataagagtagaaatcttacatttgatgcattattta 11927773  T
229 tagtaaaagcatgattaaagaacaactcaaaagcttacatttgatacaaagttcaatactgtaaaaaccatacatatatttcctcttctatttacttttt 328  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||||||||||| | || || |  |||||||||||| |||||  |||||| | |||    
11927774 tagtaaaagcataattaaagagcatctcaaaagcttacatttgatacaaagttcaaaattgcaacagtcatacatatattgcctctattatttattcttt 11927873  T
329 tcaacataaaaaagacatagcttaacctcaaataatgatatgtgccctccttgatttaaaacaaaggtcaagtaactatacttgacatgatttcaaattg 428  Q
    |||| || |||||||||||  ||||| ||||||||||  |||||| |||| |||||||||||||||||||| |||| |||||||||||| ||||||||||    
11927874 tcaatatgaaaaagacatatattaacttcaaataatg--atgtgcactccctgatttaaaacaaaggtcaactaaccatacttgacatggtttcaaattg 11927971  T
429 gaattggtaagttccaacgggctgcttaactacacaa 465  Q
    |||||  || |||||| |||| |||||||||||||||    
11927972 gaattattaggttccaccgggatgcttaactacacaa 11928008  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 25342911 - 25342999
Alignment:
386 aaaacaaaggtcaagtaactatacttgacatgatttcaaattggaattggtaagttccaacgggctgcttaactacacaatggagaatg 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
25342911 aaaacaaaggtcaagtaactatacttgacatgatttcaaattggaattggtaagttccaacgggctgcttaactacacaatgaagaatg 25342999  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 2966028 - 2966116
Alignment:
386 aaaacaaaggtcaagtaactatacttgacatgatttcaaattggaattggtaagttccaacgggctgcttaactacacaatggagaatg 474  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||    
2966028 aaaacaaaggtaaagtaactatacttgacatgatttcaaattggaattggtaagtttcaacaggctgcttaactacacaatgaagaatg 2966116  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 497
Target Start/End: Original strand, 25343016 - 25343051
Alignment:
462 acaatggagaatgacagttattgaacttgaataatc 497  Q
    |||||||||||||||| |||||||||||||||||||    
25343016 acaatggagaatgacaattattgaacttgaataatc 25343051  T

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Target: scaffold0786 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 1792 - 1663
Alignment:
132 ttattttaacagcaaaaattgaaatgatactacaaaggattgaaatgcattaactgaattaataagagtagaaatcttacatttgaggcattatttatag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
1792 ttattttaacagcaaaaattgaaatgatactacaaaggattgaaatgcattaactggattaataagagtagaaatcttacatttgaggcattatttatag 1693  T
232 taaaagcatgattaaagaacaactcaaaag 261  Q
    ||||||||||||||||||||||||||||||    
1692 taaaagcatgattaaagaacaactcaaaag 1663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0786; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1923 - 1859
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgac 65  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1923 cataagagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgac 1859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0786; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2003 - 1938
Alignment:
1 catatgagtgatagcagtgattgatatggagaataataaaaccaacagaaatacatttccttgacc 66  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
2003 cataagagtgatagtagtgattgatatggagaaaaataaaaccaacacaaatacatttccttgacc 1938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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