View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14268_high_6 (Length: 384)
Name: NF14268_high_6
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14268_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 29446069 - 29445703
Alignment:
| Q |
1 |
tgacactcgttacagtttcacaggatacctttataataccttgtgtcaaaagggaatcaatactttcaaagatgacatcaaacttaagaaaggagaagag |
100 |
Q |
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| T |
29446069 |
tgacactcgttacagtttcacaggatacctttataataccttgtgccaaaagggaatcaacactttcaaagatgacatcaaacttaagaaaggagaagag |
29445970 |
T |
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| Q |
101 |
atttcaacagatcttctccaagcaattgatgaatctaggattgctatcattgtttgttcagaaaactatgcatcctcaccttggtgtcttgatgaacttg |
200 |
Q |
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| T |
29445969 |
atttcaacagatcttctccaagcaattgatgaatctaggattgctatcattgtttgttcagaaaactatgcatcctcaccttggtgtcttgatgaacttg |
29445870 |
T |
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| Q |
201 |
tcaagatcatggagtgtaaggaagaaaagggacaattggtttgtatagttttcttctatgttgatccttcaaatgtaaggcatcaaaggaaaagttttgc |
300 |
Q |
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| T |
29445869 |
tcaagatcatggagtgtaaggaagaaaagggacaattggtttgtatagttttcttctatgttgatccttcaaatgtaaggcatcaaaggaaaagttttgc |
29445770 |
T |
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| Q |
301 |
aaggtcaatggctgagcatgaagaaaatcccaaaatcagtgaagaaaaaataagtaaatggagaagt |
367 |
Q |
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| T |
29445769 |
aaggtcaatggctaagcatgaagaaaatcccaaaattagtgaagaaaaaataagtaaatggagaagt |
29445703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 40409260 - 40409294
Alignment:
| Q |
182 |
tggtgtcttgatgaacttgtcaagatcatggagtg |
216 |
Q |
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| T |
40409260 |
tggtgtcttgatgaacttgtcaagattatggagtg |
40409294 |
T |
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