View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14268_high_9 (Length: 314)
Name: NF14268_high_9
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14268_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 6953939 - 6954170
Alignment:
| Q |
14 |
cacagataatgttttcaatgaggttttggatgctagcttttgtgttgatcatatcagaaatttttggagcttctttgaatatagttgaaggaaagcctca |
113 |
Q |
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| T |
6953939 |
cacagataatgttttcaatgaggttttggatgctagcttttgtgttgatcatatcagaaatttttggagcttctttgaatatagttgaaggaaagcctca |
6954038 |
T |
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| Q |
114 |
aaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaatagatcagagtttctattagaggttagcaaa |
213 |
Q |
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| T |
6954039 |
aaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaatagatcagagtttctattagaggttagcaaa |
6954138 |
T |
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| Q |
214 |
actaaccaaattgaaaaagtttccttaattca |
245 |
Q |
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| T |
6954139 |
actaaccaaattgaaaaagtttccttaattca |
6954170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 6963492 - 6963709
Alignment:
| Q |
16 |
cagataatgttttcaatgaggttttggatgctagcttttgtgttgatc-----atatcagaaatttttggagcttctttgaatatagttgaaggaaagcc |
110 |
Q |
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| T |
6963492 |
cagagaatgttttcaatgaggttttggatgctagcttttgtgttgatcagatcatatcagaaatttttggagcttctttgaatatagttgaaggaaagcc |
6963591 |
T |
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| Q |
111 |
tcaaaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaatagatcagagtttctattagaggttagc |
210 |
Q |
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| T |
6963592 |
tcaaaggattcttttggatacagatgttgatactgatgatttatttgcattgctatatcttttgaagctcaatagattagaatttcaattagaggttagc |
6963691 |
T |
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| Q |
211 |
aaaactaaccaaattgaa |
228 |
Q |
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| T |
6963692 |
aaaacaaaccaaattgaa |
6963709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 6954190 - 6954219
Alignment:
| Q |
265 |
gtggttttcattgtgaattattgatgcttt |
294 |
Q |
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| T |
6954190 |
gtggttttcattgtgaattattgatgcttt |
6954219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 18134710 - 18134631
Alignment:
| Q |
103 |
ggaaagcctcaaaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaa |
182 |
Q |
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| T |
18134710 |
ggaaagcctcaacgaattgttgtggatactgatgttgatactgatgatttatttgctctgctttatcttcttaagctcaa |
18134631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 49121919 - 49121840
Alignment:
| Q |
103 |
ggaaagcctcaaaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaa |
182 |
Q |
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| T |
49121919 |
ggaaagcctcaacgaattgttgtggatactgatgttgatactgatgatttatttgctctgctttatcttcttaagctcaa |
49121840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 49105320 - 49105241
Alignment:
| Q |
127 |
gatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaatagatcagagtttctattagaggt |
206 |
Q |
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| T |
49105320 |
gatacagatgttgctaccgacgatttatttgctctactctaccttctcaagctcaatacttcagagtttcaattagaggt |
49105241 |
T |
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