View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14268_low_2 (Length: 701)
Name: NF14268_low_2
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14268_low_2 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 8 - 689
Target Start/End: Complemental strand, 586972 - 586293
Alignment:
| Q |
8 |
tttggccaaaagataagtttaattaaataaaatacttaaataattacacactatatcaagaataatagcataattgaaatgtccaattaatcaagacaac |
107 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
586972 |
tttggccaaaagataagtttaattaaataaa-tacttaaataattacacactatatcaagaataatagcataattgaaatgtccaattaatcaagacaac |
586874 |
T |
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| Q |
108 |
ctactatatacattatcactaaatcgtacattttcaccagcatcaatagcactgattgccagaagtaaattggtaaaaataaa---tatctttagctata |
204 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
586873 |
ctactatatacattatcactaactcgtacattttcaccagcatcaatagcactgattgccagaagtaaattggaaaaaaaaaaatatatctttagctata |
586774 |
T |
|
| Q |
205 |
ctattttataaccatccagttatccacagtttttctcatacatctatctgcttttgctatttttcttccaatacaatgccttgttggaacaaaactctaa |
304 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
586773 |
ctatttcataaccatccagttatccacagtttttctcatacatct----gcttttgctatttttcttccaatacaatgccttgttggaacaaaactctaa |
586678 |
T |
|
| Q |
305 |
ccttaagttactggaaggctgatccaagaaaagcccgatcacaacattcatatcctgaaggacctaatacaatactaagataacaacatacaccatatca |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
586677 |
ccttaagttactggaaggctgatccaagaaaagcccgatcacaacattcatatcctgaaggacctaatacaatactaagataacaacatacaccatatca |
586578 |
T |
|
| Q |
405 |
tgatgctgtccattgaggtagtactcttcctacagcatttgtaccagttaatttatctaatatgacattgtcaatatcgatacagtctaggtcctcgtca |
504 |
Q |
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| T |
586577 |
tgatgctgtccattgaggtagtactcttcctgcagcatttgtaccagttaatttatctaatacgacattgtcaatatcgatacagtctaggtcctcgtca |
586478 |
T |
|
| Q |
505 |
aggcatccatggtaatagtcttcctcttctgattcatatatctcagcctttttaatttgtcgctgtaccgtccttttcttggagcgaccagtacttttga |
604 |
Q |
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| T |
586477 |
aggcatccatggtaatagtcttcctcttctgattcatatatctcagcctttttaatttgtctctttaccgtccttttcttggagcgaccagtacttttga |
586378 |
T |
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| Q |
605 |
ttaaggcatcatcatcctcaccatttgaatctggcgttctatttgcttctcgtcttcttttggctgaatccacactgcctttgct |
689 |
Q |
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| T |
586377 |
ttaaggcatcatcatcctcaccatttgaatctggcgttctatttgcttctcgtcttcttttggctgaatccacactgcctttgct |
586293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 32802847 - 32802759
Alignment:
| Q |
8 |
tttggccaaaagataagtttaattaaataaaatacttaaataattacacactatatcaagaataatagcataattgaaatgtccaatta |
96 |
Q |
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| T |
32802847 |
tttggccaagatataagtttagttaaatattctactcaaataattacacactatatcaagaataatatcatagttgaagtgtccaatta |
32802759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 272837 - 272925
Alignment:
| Q |
8 |
tttggccaaaagataagtttaattaaataaaatacttaaataattacacactatatcaagaataatagcataattgaaatgtccaatta |
96 |
Q |
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| T |
272837 |
tttggccaagatataagtttagttaaatatcctactcaaataattacacactatatcaagaataatatcataattgaagtgtccaatta |
272925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 1537875 - 1537787
Alignment:
| Q |
8 |
tttggccaaaagataagtttaattaaataaaatacttaaataattacacactatatcaagaataatagcataattgaaatgtccaatta |
96 |
Q |
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| T |
1537875 |
tttggccaagatataagtttagttaaatatcctactcaaataattacacactatatcaagaataatatcataattgaagtttccaatta |
1537787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 17767922 - 17767834
Alignment:
| Q |
8 |
tttggccaaaagataagtttaattaaataaaatacttaaataattacacactatatcaagaataatagcataattgaaatgtccaatta |
96 |
Q |
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||||||||| | ||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |||||||||| | |||||||| |
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| T |
17767922 |
tttggccaagatataagtttagttaaatatcctactcaaataattacacactatatcaagaataatatcataattgaagtatccaatta |
17767834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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