View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14268_low_3 (Length: 671)
Name: NF14268_low_3
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14268_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 21 - 531
Target Start/End: Original strand, 29446035 - 29446543
Alignment:
| Q |
21 |
tataaaggtagcctgtgaaactgtaacgagtgtcatcgccgtagaaacttataaacacatcataagtccaaccatggttgaaggaatttgaggaagaatt |
120 |
Q |
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| T |
29446035 |
tataaaggtatcctgtgaaactgtaacgagtgtcatcgccgtagaaacttataaacacatcataagtccaaccatggttgaaggaatttgaggaagaatt |
29446134 |
T |
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| Q |
121 |
tttcattgtcttctataccaagcatatatgatttcaaagataagaagaatgtgaaggatgaaatgatac--aacataaattgccataagaactaggaagc |
218 |
Q |
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| T |
29446135 |
ttccattgtcttctagaccaagc-tatttactttcaaagataagaagaatgtgaagaaggaagtgatggttaacataaattgccataagaactaggaagc |
29446233 |
T |
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| Q |
219 |
tatatacatagcaatagcataaccaatcttgtcatgtaca---ctttggtttattgaaactattgaaattatcaaaatggaatttaaaatagaagtcaat |
315 |
Q |
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| T |
29446234 |
tata--catagc-------ttatcaattttgt-atgtatataactttggtttattgaaactatagaaattatcaaattgaaatttaaaataaaagtcaat |
29446323 |
T |
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| Q |
316 |
gaaaaagaaagctcgataatattgatgttggtggcaggcatgccatgtaactttggcttcattaa-ttttttatgcagaaaaagacatgattgtttatat |
414 |
Q |
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| T |
29446324 |
gaaaaagaaagctcgataacattgatgttggtggcaggcatgtcatgtaactttgtcttgattaatttttttatgcacaaaaagacatgattgtttatat |
29446423 |
T |
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| Q |
415 |
tatataaaataaatgaatagattatattcaacaaatgcatagtgtagtgaagc----atatgctaccaaaataagtagcttttttaatttctcattcttt |
510 |
Q |
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| T |
29446424 |
tatataaaataaatgaatagattatactcaacaaatgcatagtatag-caagcatatatatgctaccaaaatgaatagcttttttaatttctcattcatt |
29446522 |
T |
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| Q |
511 |
ctctttaaggaatatccttca |
531 |
Q |
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| T |
29446523 |
ttctttaaggaatatccttca |
29446543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 578 - 635
Target Start/End: Original strand, 29446540 - 29446597
Alignment:
| Q |
578 |
ttcaaatgttcacacaaattcagacttagtacttaagagatttttgggttacaaaccc |
635 |
Q |
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| T |
29446540 |
ttcaaatgtgcatacaaattcagacttagtacttaagagatttttgggttacaaaccc |
29446597 |
T |
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