View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14268_low_4 (Length: 551)

Name: NF14268_low_4
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14268_low_4
NF14268_low_4
[»] chr5 (13 HSPs)
chr5 (18-541)||(17377448-17377978)
chr5 (36-251)||(17392536-17392766)
chr5 (22-251)||(17383817-17384055)
chr5 (248-451)||(17392793-17392997)
chr5 (463-541)||(17393030-17393110)
chr5 (171-220)||(32429428-32429477)
chr5 (458-505)||(17389722-17389769)
chr5 (248-290)||(17384082-17384124)
chr5 (170-224)||(20112218-20112272)
chr5 (91-140)||(17380105-17380154)
chr5 (184-230)||(19653644-19653690)
chr5 (36-141)||(20112075-20112183)
chr5 (297-402)||(17384143-17384248)
[»] chr1 (2 HSPs)
chr1 (22-206)||(26052742-26052936)
chr1 (318-451)||(26052557-26052689)
[»] chr6 (3 HSPs)
chr6 (170-219)||(3254895-3254944)
chr6 (174-233)||(14435590-14435649)
chr6 (187-224)||(14438258-14438295)
[»] scaffold1377 (1 HSPs)
scaffold1377 (172-224)||(1349-1401)
[»] chr2 (1 HSPs)
chr2 (252-290)||(15785027-15785065)
[»] scaffold0009 (1 HSPs)
scaffold0009 (104-141)||(40809-40846)
[»] chr3 (4 HSPs)
chr3 (170-218)||(2467536-2467584)
chr3 (165-213)||(32224417-32224465)
chr3 (250-286)||(32226939-32226975)
chr3 (250-286)||(32241577-32241613)


Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 17377448 - 17377978
Alignment:
Q  18 cttatcttctattgagtatttt-acaaatcctattttgtctcggatcgacaggcgattaattcaacaaccatagattgggaatatccagatcatgttcca 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17377448 cttatcttctattgagtatttttacaaatcctattttgtctcggatcgacaggcgaataattcaacaaccatagattgggaatatccagatcatgttcca 17377547  T
Q  117 gaatgtgtttcgtctcatctaacaaaatttgaagttaaa----ct--agcttgcgaagctgatcttcaattcgcaacatatattttgcagaatgcgagac 210  Q
    |||||||||||||||||||||||||| ||| |||||| |    ||  |||||||||||||||| ||| ||||||||||||||||||||  ||||||||||    
T  17377548 gaatgtgtttcgtctcatctaacaaactttaaagttataggctctgaagcttgcgaagctgattttcgattcgcaacatatattttgcgaaatgcgagac 17377647  T
Q  211 ttttacaagttatgtccattgaccatagtcttcacccaaatttatcctcctgtccaaggatctctcccacatgtaagctgatttagtagttcctagatgt 310  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17377648 ttttacaagttatgtccattcaccatagtcttcacgcaaatttatcctcctgtccaaggatctctcccacatgtaagctgattcagtagttcctagatgt 17377747  T
Q  311 atgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttctt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17377748 atgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttctt 17377847  T
Q  411 ctttgcattgttttgttagctcaaattttcgcgatgagccaagcatcctttgtttgtattgagcataatttaccaagcttcttttgccgttatagattat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17377848 ctttgcattgttttgttagctcaaattttcgcgatgagccaagcatcctttgtttgtattgagcataatttaccaagcttcttttgccgttatagattat 17377947  T
Q  511 ctttttctatctgttttcttaccaacctttg 541  Q
    ||||| |||||||||||||||||||||||||    
T  17377948 cttttcctatctgttttcttaccaacctttg 17377978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 17392536 - 17392766
Alignment:
Q  36 ttttacaaatcctattttgtctcggatcgaca------ggcgattaattcaacaaccataga---ttgggaatatccagatcatgttccagaatgtgttt 126  Q
    ||||||||||||||||||||||||||| ||||      |||||  |||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  17392536 ttttacaaatcctattttgtctcggattgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgttt 17392635  T
Q  127 cgtctcatctaacaaaatttgaagt--taaact----agcttgcgaagctgatcttcaattcgcaacatatattttgcagaatgcgagacttttacaagt 220  Q
    |||||||||||||||||||||||||  || |||    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  17392636 cgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgattttcgattcgcaacatatattttgcagaatgcgagacttttacaagt 17392735  T
Q  221 tatgtccattgaccatagtcttcacccaaat 251  Q
    |||| ||||| | |||| |||||||||||||    
T  17392736 tatgaccattcatcatactcttcacccaaat 17392766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 17383817 - 17384055
Alignment:
Q  22 tcttctattgagtatttt-acaaatcctattttgtctcggatcgacaggcgattaattcaacaaccataga---ttgggaatatccagatcatgttccag 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| ||||||||   |||||| ||| ||||||   ||||||||||||||||||||||||||    
T  17383817 tcttctatcgagtatttttacatatcctattttgtctcggattgacaggcggagaattcagcaagcatagagcattgggaatatccagatcatgttccag 17383916  T
Q  118 aatgtgtttcgtctcatctaacaaaatttgaagtta--aact----agcttgcgaagctgatcttcaattcgcaacatatattttgcagaatgcgagact 211  Q
    |||||||||||||| |||||||||||||||||||||   |||    |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  17383917 aatgtgtttcgtctaatctaacaaaatttgaagttatgcactatgaagcttgggaagctgattttcgattcgcaacatatattttgcagaatgcgagact 17384016  T
Q  212 tttacaagttatgtccattgaccatagtcttcacccaaat 251  Q
    ||| | || |||| |||||  ||||| |||||||||||||    
T  17384017 tttgc-agatatgaccatttgccatactcttcacccaaat 17384055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 248 - 451
Target Start/End: Original strand, 17392793 - 17392997
Alignment:
Q  248 aaatttatcctcctgtccaaggatctctcccacatgtaagctgattt--agtagttcctagatgtatgtctggtgttttcgttagtttcaatacttgctt 345  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |   || |||||||||||||||  |||||||||| ||||||||| ||| |  ||     
T  17392793 aaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttcctagatgtatacctggtgtttttgttagtttcgatattcacta 17392892  T
Q  346 ctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgat 445  Q
    ||||||||||||||||||| ||||||||||||||||  || ||| | || | ||||||||||| ||||||||||||||||||| ||| |||||||| |||    
T  17392893 ctactgaatttgatggtttgaacaatataggcttattcaagtcaatggttttccaatactttcatctttgcattgttttgttaactc-aattttcgtgat 17392991  T
Q  446 gagcca 451  Q
    ||||||    
T  17392992 gagcca 17392997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 17393030 - 17393110
Alignment:
Q  463 tttgtattgagcataatttaccaagcttcttttgccgttatagatt--atctttttctatctgttttcttaccaacctttg 541  Q
    ||||||||||||||||||| ||| || || ||||| |||||||  |  ||||||||||||||||||| |||||||||||||    
T  17393030 tttgtattgagcataatttcccatgcatcctttgctgttatagcatggatctttttctatctgtttttttaccaacctttg 17393110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 32429477 - 32429428
Alignment:
Q  171 gatcttcaattcgcaacatatattttgcagaatgcgagacttttacaagt 220  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  32429477 gatcttcaattcgcaacatatattttgcagaatgcgaagcttttagaagt 32429428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 17389722 - 17389769
Alignment:
Q  458 ctttgtttgtattgagcataatttaccaagcttcttttgccgttatag 505  Q
    |||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  17389722 ctttgtatgtattgagcataatttaccaagcttcctttgctgttatag 17389769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 17384082 - 17384124
Alignment:
Q  248 aaatttatcctcctgtccaaggatctctcccacatgtaagctg 290  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  17384082 aaatttatcctcttgtccaaggatctctccctcatgtaagctg 17384124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 20112218 - 20112272
Alignment:
Q  170 tgatcttcaattcgcaacatatattttgcagaatgcgagacttttacaagttatg 224  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||| ||||||    
T  20112218 tgattttcaatttgcaacatatattttgcagaatgcaagacttctacaggttatg 20112272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 17380105 - 17380154
Alignment:
Q  91 attgggaatatccagatcatgttccagaatgtgtttcgtctcatctaaca 140  Q
    |||||||||||||| ||||||||| ||| |||||||| ||||||||||||    
T  17380105 attgggaatatccatatcatgttctagattgtgtttcatctcatctaaca 17380154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 19653690 - 19653644
Alignment:
Q  184 caacatatattttgcagaatgcgagacttttacaagttatgtccatt 230  Q
    ||||||| ||||||| |||||||||||| |||||||||||| |||||    
T  19653690 caacatacattttgctgaatgcgagactcttacaagttatgaccatt 19653644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 20112075 - 20112183
Alignment:
Q  36 ttttacaaatcctattttgtctcggatcgacaggcgattaattcaacaaccatag---attgggaatatccagatcatgttccagaatgtgtttcgtctc 132  Q
    |||||||||||||||||||| || ||| |||||| | || |||||||||| | ||   ||||| |||| ||| || ||||||| |||||||||| |||||    
T  20112075 ttttacaaatcctattttgtttccgattgacaggggtttgattcaacaactaaagagaattggaaatacccatatgatgttcctgaatgtgttttgtctc 20112174  T
Q  133 atctaacaa 141  Q
     ||| ||||    
T  20112175 gtctcacaa 20112183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 402
Target Start/End: Original strand, 17384143 - 17384248
Alignment:
Q  297 tagttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtct 396  Q
    ||||||| ||||||||  | ||| |||| |||| || ||||| || || |||||| |||||||||||  ||||||||||||||||  |||||| | ||||    
T  17384143 tagttcccagatgtataccgggtatttttgttacttacaatatttactactactggatttgatggttcgaacaatataggcttattcaaatcaatggtct 17384242  T
Q  397 gccaat 402  Q
     |||||    
T  17384243 accaat 17384248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 26052936 - 26052742
Alignment:
Q  22 tcttctattgagtatttt-acaaatcctattttgtctcggatcgacaggcgattaattcaacaaccataga---ttgggaatatccagatcatgttccag 117  Q
    |||||||||||||||||| |||||||||||||||| |||||| |||||| ||   ||||||||||||||||   ||||||||||||||||||||||||||    
T  26052936 tcttctattgagtatttttacaaatcctattttgtatcggattgacaggagaagtattcaacaaccatagagcattgggaatatccagatcatgttccag 26052837  T
Q  118 aatgtgtttcgtctcatctaacaaaatttgaagt--taaact----agcttgcgaagctgatcttcaattcgcaacatatattttgcagaatgcg 206  Q
    |||||||||| |||||||||||||||||||||||  || |||    |||||| ||| ||||| ||| ||||||||||||||||||||||||||||    
T  26052836 aatgtgtttcatctcatctaacaaaatttgaagttatagactatgaagcttgtgaaactgatattcgattcgcaacatatattttgcagaatgcg 26052742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 318 - 451
Target Start/End: Complemental strand, 26052689 - 26052557
Alignment:
Q  318 gtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgca 417  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||  ||||| | ||| |||||||||||| ||| ||||    
T  26052689 gtgtttttgttagtttcaatatttgctactactgaatttgatggtttgaacaatataggtttatactaatcaatggtccgccaatactttcatctgtgca 26052590  T
Q  418 ttgttttgttagctcaaattttcgcgatgagcca 451  Q
    ||||||||||| ||| |||||||| |||||||||    
T  26052589 ttgttttgttaactc-aattttcgtgatgagcca 26052557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 3254944 - 3254895
Alignment:
Q  170 tgatcttcaattcgcaacatatattttgcagaatgcgagacttttacaag 219  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  3254944 tgatcttcaatttgcaaaatatattttgcagaatgcgagtcttttacaag 3254895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 14435649 - 14435590
Alignment:
Q  174 cttcaattcgcaacatatattttgcagaatgcgagacttttacaagttatgtccattgac 233  Q
    |||||||| |||| |||||| |||||||||||||| |||||||||| |||| | ||||||    
T  14435649 cttcaatttgcaaaatatatattgcagaatgcgaggcttttacaagatatgacaattgac 14435590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 14438295 - 14438258
Alignment:
Q  187 catatattttgcagaatgcgagacttttacaagttatg 224  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  14438295 catatattttgcagaatgcgaggcttttacaagatatg 14438258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1377 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 1401 - 1349
Alignment:
Q  172 atcttcaattcgcaacatatattttgcagaatgcgagacttttacaagttatg 224  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||| ||||    
T  1401 atcttcgatttgcaacatatattttgcagaatgcgaggcttttacaagatatg 1349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 15785027 - 15785065
Alignment:
Q  252 ttatcctcctgtccaaggatctctcccacatgtaagctg 290  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  15785027 ttatcctcctgtccaaaaatctctcccacatgtaagctg 15785065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 40809 - 40846
Alignment:
Q  104 agatcatgttccagaatgtgtttcgtctcatctaacaa 141  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  40809 agatcatgttcctgaatgtgtttcgtctcatcttacaa 40846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 2467584 - 2467536
Alignment:
Q  170 tgatcttcaattcgcaacatatattttgcagaatgcgagacttttacaa 218  Q
    |||||||| ||| ||||||||||| |||||||||| |||| ||||||||    
T  2467584 tgatcttcgatttgcaacatatatattgcagaatgggagaattttacaa 2467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 32224465 - 32224417
Alignment:
Q  165 gaagctgatcttcaattcgcaacatatattttgcagaatgcgagacttt 213  Q
    ||||||||| ||| ||| | ||||||||||||||||||||| |||||||    
T  32224465 gaagctgattttcgatttgtaacatatattttgcagaatgcaagacttt 32224417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 32226939 - 32226975
Alignment:
Q  250 atttatcctcctgtccaaggatctctcccacatgtaa 286  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  32226939 atttatccttctgtccaaggatctctccgacatgtaa 32226975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 32241613 - 32241577
Alignment:
Q  250 atttatcctcctgtccaaggatctctcccacatgtaa 286  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32241613 atttatcctcctgtccaaggatctctccggcatgtaa 32241577  T

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