View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14268_low_6 (Length: 391)
Name: NF14268_low_6
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14268_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 29525298 - 29525676
Alignment:
| Q |
8 |
attatacttgaagaaaattcagtaaatgttgtagcatcgtaaaggannnnnnnaatccatatatatggacaatggcaataacatcacaggaactcggaaa |
107 |
Q |
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| T |
29525298 |
attatacttgaagaaaattcagtaaatgttgtagcatcgtaaaggatttgtttaatccatatatatggacaatggcaataacatcacaggaactcggaaa |
29525397 |
T |
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| Q |
108 |
caatttcaacactgtacacccaacaccgtataaaataacaatttcaatgtgttcggattccgaggaacaaatgaattaatataaaatcagaaaccgtata |
207 |
Q |
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| T |
29525398 |
caatttcaacactgtacacccaacaccgtatagaataacaatttcaatttgttcggattacgaggaaaaaatgaattaatataaaatcagaaaccgtata |
29525497 |
T |
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| Q |
208 |
gaatgtgcaagaaatacaatgtgtctgatgacgaattctgagttctaaaagacatttttggcggaaataaagaattataaacagtaacagtaaacaagaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
29525498 |
gaatgtgcaagaaatacaatgtgtctgatgacgaattctgagttctaaaagacatttttggcagaaataaagaattataaacagtaacagt-aacaagaa |
29525596 |
T |
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| Q |
308 |
aactataaattcctacagaataagaattataaggaacatttaaacagagggaagagataagaccagagattgttaacaaa |
387 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525597 |
aactataaattcctacagaacaagaattataaggaacatttaaacagagggaagagataagaccagagattgttaacaaa |
29525676 |
T |
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