View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14268_low_8 (Length: 336)
Name: NF14268_low_8
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14268_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 23178101 - 23177784
Alignment:
| Q |
1 |
tgatcaaagtataaacgagccgctgatatgccggaaattctaacccttacaaaaaatttgtctccactctggttgcaagtattttaaaatcagaacaaac |
100 |
Q |
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| T |
23178101 |
tgatcaaggtataaacgagctgccgatatgccggaaattctaacccttacaacaaatttgtctccactctggttgcaagttttataaaatcagaagaaac |
23178002 |
T |
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| Q |
101 |
attgacgaattgatctatggtatctatttgtatcaaaatattatacctaacnnnnnnnntaacaaacaaatttggtgtgacttactcttaatggtgcaag |
200 |
Q |
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| T |
23178001 |
attgacaaattgatctatggtatctatttgtatcaaaatattatacctaacaaaaaaa-taataaacaaatttggtgtgacttactcttaatggtgcaag |
23177903 |
T |
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| Q |
201 |
gaatttgagggataattttgacattgccattgcatcaccactccgaatcacatcagcaaaattaataccaatgcttttcaaaaattcatcaccaccttat |
300 |
Q |
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| T |
23177902 |
gaatttgagggataaatttgacagtgccattgcatcaccactccgaatcacatcagcaaaattaataccaatgcttttaaaaaattcatcaccaccttat |
23177803 |
T |
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| Q |
301 |
aaagatattatgcaaaact |
319 |
Q |
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| T |
23177802 |
aaagatattatgcataact |
23177784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 23223257 - 23223126
Alignment:
| Q |
178 |
tgacttactcttaatggtgcaaggaatttgagggataattttgacattgccattgcatcaccactccgaatcacatcagcaaaattaataccaatgcttt |
277 |
Q |
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| T |
23223257 |
tgacttactcttagaggtgcaaggaatttgaaggatagttcagacaatgccaatgcatcaccacagcgagccacggcatcacaattaatgcctatgcttt |
23223158 |
T |
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| Q |
278 |
tcaaaaattcatcaccaccttataaagatatt |
309 |
Q |
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| T |
23223157 |
ccaaaaattcatgacgaccttatgaaggtatt |
23223126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 23223393 - 23223343
Alignment:
| Q |
54 |
aaatttgtctccactctggttgcaagtattttaaaatcagaacaaacattg |
104 |
Q |
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|||| ||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
23223393 |
aaatctgtctccactctggttgcatgttttttaaaatcagaacaaacattg |
23223343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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