View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14268_low_9 (Length: 324)
Name: NF14268_low_9
Description: NF14268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14268_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 6612888 - 6612590
Alignment:
| Q |
18 |
gttttaagtcattgaccaaaaaacattagacatgcctctgattagtggttgtatacatgtctcggcaaaaacttgtcatgttagccctaattcatgagaa |
117 |
Q |
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| T |
6612888 |
gttttaagtcattgaccaaaaaacattagacatgcctctgattagtggttgtatatatgtctcggcaaaaacatgtcatgttagccctaattcatgagaa |
6612789 |
T |
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| Q |
118 |
gtttcttattgcaaaaagactttggaagtaaagtgatccatgcatggtacatctttggaatgagagaatgtgtctcttctttacttaatactaaagcact |
217 |
Q |
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| T |
6612788 |
gtttcttattgcaaaaagactttgaaagtaaagtgatccatacatggtgcatctttggaatgagagaatgtgtctcttctttacttaatactaaagcact |
6612689 |
T |
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| Q |
218 |
gtcgctcacgaaaacttttgcttataaaaaagggccatgctaac--nnnnnnnnaacagactaaaataaaatatatttccaaattaaaatgtcgttcat |
314 |
Q |
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||| ||||| |||||||||||||||||||||| | ||||||||| || ||| |||||||||||||||| ||||||||||||||| ||||| |
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| T |
6612688 |
gtccctcaccaaaacttttgcttataaaaaagtgtcatgctaacttttttttttaagagattaaaataaaatatattaccaaattaaaatgtcattcat |
6612590 |
T |
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