View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_high_17 (Length: 395)
Name: NF14269_high_17
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 17441177 - 17440833
Alignment:
| Q |
20 |
gttcctcccatgttgataacataagatcgattcctcggaacatccaataagtttgtgaaaatcattcatagcatccatgttgtcgttgaagcaagctgta |
119 |
Q |
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| T |
17441177 |
gttcctcccatgttgataacataagatcgattcctcggaacatccaataagtttgtgaaaatcattcatagcctccatgttgtcgttgaagcaagctgta |
17441078 |
T |
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| Q |
120 |
ttttggatcttctcgagtttgagccgagcctcttctctctgatcttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgac |
219 |
Q |
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| T |
17441077 |
ttttggatcttctcgagtttgagtcgagcctcttctctctgatcttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgag |
17440978 |
T |
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| Q |
220 |
gatcatcaaatgaaggatcaacaagtttcttgggaggagtttgctgacatggagtttgatgatcaacagcgaccctttctttttctgacgtctctaattg |
319 |
Q |
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| T |
17440977 |
gatcatcaatagaaggatcaacaagtttcttgggaggagtttgctgacatggagtttgatgatcaacagcgaccctttctttttctga---ctctaattg |
17440881 |
T |
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| Q |
320 |
catcttctttgtaagcgcattaatggaaacaaattttctcttcttctt |
367 |
Q |
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| T |
17440880 |
catcttctttgtaagcgcgttaatggaaacaaattttctcttcttctt |
17440833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 17434784 - 17434969
Alignment:
| Q |
56 |
ggaacatccaataagtttgtgaaaatcattcatagcatccatgttgtcgttgaagcaagctgtattttggatcttctcgagtttgagccgagcctcttct |
155 |
Q |
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| T |
17434784 |
ggaacatccaatgagtttgtgaaaatcatgcatagcatccatgttgtcactgaaacgagcggtgttttggataccctcgagtttgaaccgagccacttct |
17434883 |
T |
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| Q |
156 |
ctctgatcttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgacgatcatcaaatgaaggatcaac |
241 |
Q |
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| T |
17434884 |
ctttcatctggacgaacttgactcttcacttgtctccaattcgacaaagtcttcttcactttaggatcatcaataaaaggatcaac |
17434969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 57 - 262
Target Start/End: Original strand, 16857633 - 16857838
Alignment:
| Q |
57 |
gaacatccaataagtttgtgaaaatcattcatagcatccatgttgtcgttgaagcaagctgtattttggatcttctcgagtttgagccgagcctcttctc |
156 |
Q |
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| T |
16857633 |
gaacatccaatgagtttgtgaaaatcaaacataacatctatactctcattaaaacaagcagtattttggatcttctcgagtttgagttgagccgcttctc |
16857732 |
T |
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| Q |
157 |
tctgatcttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgacgatcatcaaatgaaggatcaacaagtttcttgggagg |
256 |
Q |
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| T |
16857733 |
tttgatcttgtcgaacttgacccttcatttgtctccaattagacaacgtcttcttcacttcaacatcatcaacaaaaggaccaacaagttttttgtaagg |
16857832 |
T |
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| Q |
257 |
agtttg |
262 |
Q |
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| T |
16857833 |
agtttg |
16857838 |
T |
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