View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_high_19 (Length: 379)
Name: NF14269_high_19
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 28904016 - 28903663
Alignment:
| Q |
18 |
ttttactgtgtcatatcgagtacaacaattttcctctctggtatgattgtttaagaacgtaaatttgtagtatttcacaactcagaaattacat-atgat |
116 |
Q |
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| T |
28904016 |
ttttactgtgtcatatcgagtacaacaattttcctctctggtatgattgtttaagaacgtaaatttgtaatatttcacaactcagaaattacatcatgat |
28903917 |
T |
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| Q |
117 |
attcaaaacttgtttcataaagagactattacatgtgagtgtcggttagattgctagacatactcatgtgatgatactctttaagaaaaggttcttaatt |
216 |
Q |
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| T |
28903916 |
attcaaaacttgtttcataaagagactattacatgtgagtgtcggttagattgctagacatactcatgtggtgatactctttaagaaaaggttcttaatt |
28903817 |
T |
|
| Q |
217 |
aacttaagaaccttaagcaaattttatttctgataatgtttccaataagatccgttgaccatataaacaacaatcattgtcctctactggttctgtctag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28903816 |
aacttaagaaccttaagcaaattttatttctgataatgtttccaataagatccgttgaccatataaacaacaatcattgtcctctactggttctgtctag |
28903717 |
T |
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| Q |
317 |
actgtggaattgtatatggcatagcattcattgataaataatagtgtcaatatt |
370 |
Q |
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| T |
28903716 |
actgtggaattgtctatggcataacattcattgataaataacagtgtcaatatt |
28903663 |
T |
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