View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14269_high_29 (Length: 280)

Name: NF14269_high_29
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14269_high_29
NF14269_high_29
[»] chr2 (16 HSPs)
chr2 (138-267)||(8417412-8417541)
chr2 (141-260)||(8439297-8439416)
chr2 (141-260)||(8375687-8375806)
chr2 (141-260)||(8412200-8412319)
chr2 (141-260)||(8434298-8434417)
chr2 (16-100)||(8412072-8412156)
chr2 (16-100)||(8417290-8417374)
chr2 (16-100)||(8434170-8434254)
chr2 (16-100)||(8375850-8375934)
chr2 (16-100)||(8439169-8439253)
chr2 (138-239)||(8395394-8395495)
chr2 (138-239)||(8406077-8406178)
chr2 (15-90)||(8431210-8431285)
chr2 (18-65)||(8417155-8417202)
chr2 (16-100)||(8395533-8395617)
chr2 (16-100)||(8405955-8406039)
[»] chr4 (2 HSPs)
chr4 (31-95)||(55336332-55336396)
chr4 (178-234)||(55331053-55331109)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 8417412 - 8417541
Alignment:
Q  138 ggaaggccaccaattagcaggaacaaatttagcagggtacttttcaagcattactcccaataaaggaagtgggtatgctttatcaagtgccaaaactctt 237  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||    
T  8417412 ggaaggccaccaattagcaggaacaaatttagcagggtaattttcaagcattgctcccaataaaggaagtgggtgtgctttatcatgtgccaaaactttt 8417511  T
Q  238 tcaatagcttctttgacatcttcttcagta 267  Q
    ||||||||||||||||||||||||| ||||    
T  8417512 tcaatagcttctttgacatcttctttagta 8417541  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 8439297 - 8439416
Alignment:
Q  141 aggccaccaattagcaggaacaaatttagcagggtacttttcaagcattactcccaataaaggaagtgggtatgctttatcaagtgccaaaactctttca 240  Q
    ||||||||||||||||||  ||||||| | |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  ||||     
T  8439297 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc 8439396  T
Q  241 atagcttctttgacatcttc 260  Q
    || || ||||||||||||||    
T  8439397 attgcatctttgacatcttc 8439416  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 8375806 - 8375687
Alignment:
Q  141 aggccaccaattagcaggaacaaatttagcagggtacttttcaagcattactcccaataaaggaagtgggtatgctttatcaagtgccaaaactctttca 240  Q
    ||||||||||||||||||  ||||||| | |||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||  ||||     
T  8375806 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8375707  T
Q  241 atagcttctttgacatcttc 260  Q
    || || ||||||||||||||    
T  8375706 attgcatctttgacatcttc 8375687  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 8412200 - 8412319
Alignment:
Q  141 aggccaccaattagcaggaacaaatttagcagggtacttttcaagcattactcccaataaaggaagtgggtatgctttatcaagtgccaaaactctttca 240  Q
    ||||||||||||||||||  ||||||| | |||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||  ||||     
T  8412200 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8412299  T
Q  241 atagcttctttgacatcttc 260  Q
    || || ||||||||||||||    
T  8412300 attgcatctttgacatcttc 8412319  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 8434298 - 8434417
Alignment:
Q  141 aggccaccaattagcaggaacaaatttagcagggtacttttcaagcattactcccaataaaggaagtgggtatgctttatcaagtgccaaaactctttca 240  Q
    ||||||||||||||||||  ||||||| | |||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||  ||||     
T  8434298 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8434397  T
Q  241 atagcttctttgacatcttc 260  Q
    || || ||||||||||||||    
T  8434398 attgcatctttgacatcttc 8434417  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8412072 - 8412156
Alignment:
Q  16 tcataatcttcagcatcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccatccattgttca 100  Q
    ||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||    
T  8412072 tcataatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatccattgttca 8412156  T

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Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8417290 - 8417374
Alignment:
Q  16 tcataatcttcagcatcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccatccattgttca 100  Q
    ||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||    
T  8417290 tcataatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattctttactccatccgttgttca 8417374  T

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Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8434170 - 8434254
Alignment:
Q  16 tcataatcttcagcatcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccatccattgttca 100  Q
    ||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||    
T  8434170 tcataatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatccattgttca 8434254  T

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Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 8375934 - 8375850
Alignment:
Q  16 tcataatcttcagcatcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccatccattgttca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||||| ||||    
T  8375934 tcataatcttcagcgtcttttctctttatcacttcaacaacttccctcatttccatttccaattctttactccacccattattca 8375850  T

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Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8439169 - 8439253
Alignment:
Q  16 tcataatcttcagcatcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccatccattgttca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||||| ||||    
T  8439169 tcataatcttcagcgtcttttctctttatcacttcaacaacttccctcatttccatttccaattctttactccacccattattca 8439253  T

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Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 8395495 - 8395394
Alignment:
Q  138 ggaaggccaccaattagcaggaacaaatttagcagggtacttttcaagcattactcccaataaaggaagtgggtatgctttatcaagtgccaaaactctt 237  Q
    ||||||||||||| |||||||  ||||||| |||||||| |||||||||||| |||| ||||| |||||||| |||||||| ||||| ||||||||| ||    
T  8395495 ggaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttt 8395396  T
Q  238 tc 239  Q
    ||    
T  8395395 tc 8395394  T

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Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 8406077 - 8406178
Alignment:
Q  138 ggaaggccaccaattagcaggaacaaatttagcagggtacttttcaagcattactcccaataaaggaagtgggtatgctttatcaagtgccaaaactctt 237  Q
    ||||||||||||| |||||||  ||||||| |||||||| |||||||||||| |||| ||||| |||||||| |||||||| ||||| ||||||||| ||    
T  8406077 ggaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttt 8406176  T
Q  238 tc 239  Q
    ||    
T  8406177 tc 8406178  T

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Target: chr2; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 8431210 - 8431285
Alignment:
Q  15 atcataatcttcagcatcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccat 90  Q
    ||||||||||||| | |||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||||    
T  8431210 atcataatcttcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaattcttcactccat 8431285  T

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Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 8417155 - 8417202
Alignment:
Q  18 ataatcttcagcatcttttctctttatcacttcaacaacttcctgcat 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8417155 ataatcttcagcatcttttctctttatcacttcaacaacttcctgcat 8417202  T

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Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 8395617 - 8395533
Alignment:
Q  16 tcataatcttcagcatcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccatccattgttca 100  Q
    |||||||||||||| |||||||  |||| ||| ||||||||||||  |||||||||||| ||||||| |||||||||||| ||||    
T  8395617 tcataatcttcagcgtcttttcgttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatccattattca 8395533  T

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Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8405955 - 8406039
Alignment:
Q  16 tcataatcttcagcatcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccatccattgttca 100  Q
    |||||||||||||| |||||||  |||| ||| ||||||||||||  |||||||||||| ||||||| |||||||||||| ||||    
T  8405955 tcataatcttcagcgtcttttcgttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatccattattca 8406039  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 55336332 - 55336396
Alignment:
Q  31 tcttttctctttatcacttcaacaacttcctgcatttccatttctaattctttactccatccatt 95  Q
    ||||| |||||||  ||||||| |||||||  |||||||||||||||||||| ||||||||||||    
T  55336332 tctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatccatt 55336396  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 55331053 - 55331109
Alignment:
Q  178 ttttcaagcattactcccaataaaggaagtgggtatgctttatcaagtgccaaaact 234  Q
    ||||||||||| || || |||||||||||||| || ||||| |||||||||||||||    
T  55331053 ttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaact 55331109  T

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