View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_high_35 (Length: 216)
Name: NF14269_high_35
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 12875661 - 12875850
Alignment:
| Q |
17 |
aaaataaattaaaaggtggagatgcatgtgtctttgagctcatcaagagggaagatgttgtgcttaatgttcatattttcagaggcaattgagatttgaa |
116 |
Q |
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| T |
12875661 |
aaaataaattgaaaggtggagatgcatgtgtctttgagctcatcaagagggaagatgttgtgcttaatgttcatattttcagaggcaattgatatttgaa |
12875760 |
T |
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| Q |
117 |
gctgtggttaccataataattgtgctgtactactactatat----tagctaattcataaatattttgaagcagaacaccataattaaatt |
202 |
Q |
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| T |
12875761 |
gctgtggttaccataataattgtgctgtactactactatattagctagctaattcataaatattttgaagcagaacaccataattaaatt |
12875850 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 49166063 - 49166131
Alignment:
| Q |
33 |
tggagatgcatgtgtctttgagctcatcaagagggaagatgttgtgcttaatgttcatattttcagagg |
101 |
Q |
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| T |
49166063 |
tggagatgtatgtgtttttgtgcttgccaacaaggaagatgttgtgcttgatgttcatatttttagagg |
49166131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 43752491 - 43752560
Alignment:
| Q |
33 |
tggagatgcatgtgtctttgagctcatcaagagggaagatgttgtgcttaatgttcatattttcagaggc |
102 |
Q |
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| T |
43752491 |
tggagatgtatgtgtttttgagctcgtcaataaggaagatcttgtgtttgatgctcatattttcagaggc |
43752560 |
T |
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