View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_1 (Length: 868)
Name: NF14269_low_1
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 814; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 7 - 855
Target Start/End: Complemental strand, 35922377 - 35921535
Alignment:
| Q |
7 |
catcatcaccacctccattacttcctattctcctcttcaccatcttcttcctcttccccaccattatcacctcagtttctctacctcttccacctaaatc |
106 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922377 |
catcaccaccacctccattacttcctattctcctcttcaccatcttcttcctcttccccaccattatcacctcagtttctctacctcttccacctaaatc |
35922278 |
T |
|
| Q |
107 |
atcaccttcttcaccttccacttccacttccacttccactcttgagccaaaccaactcaaagcccttcaatccctcaacatccccacatcaaagaaccct |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922277 |
atcaccttcttcaccttccacttccacttccact------cttgagccaaaccaactcaaagcccttcaatccctcaacatccccacatcaaagaaccct |
35922184 |
T |
|
| Q |
207 |
tgcatccaaccatctttccacaatgccacacaatgtgactcttcaaaaccctttagccacctcatttcccttaccctttcaaactgttcaacctccctat |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922183 |
tgcatccaaccatctttccacaatgccacacaatgtgactcttcaaaaccctttagccacctcatttcccttaccctttcaaactgttcaacctccctat |
35922084 |
T |
|
| Q |
307 |
ctctctcctacaatgccctcaaatccctctctaccctccaatcccttcacttccttaactgccccattgctccaattcacttccctcctcaactcacatc |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922083 |
ctctctcctacaatgccctcaaatccctctctaccctccaatcccttcacttccttaactgccccattgctccaattcacttccctcctcaactcacatc |
35921984 |
T |
|
| Q |
407 |
ctctcttctctccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatctcactgtctcaaatacc |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35921983 |
ctctcttctctccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatctcactgtctcaaatacc |
35921884 |
T |
|
| Q |
507 |
ccaatcaaagcttctggaccttacgttatccttgctcacatgaaaaagctcaaaactttaaccatttccaattccaatctcactggttttctaccaaaat |
606 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921883 |
ccaatcaaagcttctggaccttatgttatccttgctcacatgaaaaagctcaaaactttaaccatttccaattccaatctcactggttttctaccaaaat |
35921784 |
T |
|
| Q |
607 |
acatccattccaacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttttccattaccatgcttgatggccttgaaagtttgaa |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921783 |
acatccattccaacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttttccattaccatgcttgatggccttgaaagtttgaa |
35921684 |
T |
|
| Q |
707 |
tctttcttcaaatgggttgaagggtgagataccctcttcattaggggacttaatttcccttaaaaatctttctttggcttcaaattcattttcagggtct |
806 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921683 |
tctttcttcaaatgggctgaagggtgagataccctcttcattaggggacttaatttcccttaaaaatctttctttggcttcaaattcattttcagggtct |
35921584 |
T |
|
| Q |
807 |
atcccagattcaatttctgcaattccaggtttggttcacatggatctga |
855 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35921583 |
atcccagattcaatttctgcaattccaggtttggttcacatggatctga |
35921535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 418 - 823
Target Start/End: Complemental strand, 5124098 - 5123693
Alignment:
| Q |
418 |
ccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatctcactgtctcaaataccccaatcaaagc |
517 |
Q |
| |
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||||||| | ||||||||| || |||| ||||| ||||| ||||| ||||| || || ||||||||||| ||| |||||||| | | ||||||| |
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| T |
5124098 |
ccttcactttcatcaacagcttcaacaaaatctctggtgtttggctttctcagcttcataatctcactgatcttactatctcaaatgttcaagtcaaagc |
5123999 |
T |
|
| Q |
518 |
ttctggaccttacgttatccttgctcacatgaaaaagctcaaaactttaaccatttccaattccaatctcactggttttctaccaaaatacatccattcc |
617 |
Q |
| |
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|||||| ||||| || || |||| ||||||||| | ||||| | || |||||||| ||| | ||||||||||| ||| |||| | || ||||| |
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|
| T |
5123998 |
ttctggtccttatgtcattcttggtcacatgaactacctcaactcattgaccatttctaatgcaaatctcactggctttttacctggtcatattcattct |
5123899 |
T |
|
| Q |
618 |
aacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttttccattaccatgcttgatggccttgaaagtttgaatctttcttcaa |
717 |
Q |
| |
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|| |||||||| | ||||||||| || | ||||||||||| ||||||||||| ||||| |||||||| | | |||||||||||||||||||| | |
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| T |
5123898 |
aatctgacccatgttgatttttcaggtaatcaactcaaaggaaatatacccttttcaattacaatgcttgaaagtttagaaagtttgaatctttcttcta |
5123799 |
T |
|
| Q |
718 |
atgggttgaagggtgagataccctcttcattaggggacttaatttcccttaaaaatctttctttggcttcaaattcattttcagggtctatcccagattc |
817 |
Q |
| |
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|| | | ||||| ||||||||||| | || ||||| ||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
5123798 |
ataagcttgttggtgaaataccctcttccattggtgacttgatttctctaaaaaatctatctttagcttcaaattcattttctgggtctatcccagattc |
5123699 |
T |
|
| Q |
818 |
aatttc |
823 |
Q |
| |
|
| |||| |
|
|
| T |
5123698 |
attttc |
5123693 |
T |
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