View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_10 (Length: 495)
Name: NF14269_low_10
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 25538420 - 25538132
Alignment:
| Q |
5 |
cgaagaatatgagctcttgttagatatggcatacgccaattcagttgtttacaataatcttatagctgcttatcttcaacttggaaatttagataaggct |
104 |
Q |
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| T |
25538420 |
cgaagcatatgagctcttgttagatatggcatacgccaattcagttgtttacaataatcttatagctgcttatcttcaacttggaaatttagataaggct |
25538321 |
T |
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| Q |
105 |
aatcagctttttgatgatcttaaaatgcggtgtctggtttatgatagtgttgtgaatgccacattcatggaatggttttttaaggagggaagagaaaagg |
204 |
Q |
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| T |
25538320 |
aatcagctttttgatgatcttaaaatgcagtgtctggtttatgatagtgttgtgaatgccacattcatggaatggttttttaaggagggaagagaaaagg |
25538221 |
T |
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| Q |
205 |
aagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaatgctcttttggaggtattgcttaag |
293 |
Q |
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| T |
25538220 |
aagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaatgctcttttggaggtgttgcttaag |
25538132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 151 - 343
Target Start/End: Complemental strand, 25527249 - 25527058
Alignment:
| Q |
151 |
gtgttgtgaatgccacattcatggaatggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggat |
250 |
Q |
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| T |
25527249 |
gtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggat |
25527150 |
T |
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| Q |
251 |
gagacctgaaacttgcaatgctcttttggaggtattgcttaagcatggaaagaaaactgaggcttgggactttgttttatgacatgttagaca |
343 |
Q |
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| T |
25527149 |
gagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggac-ttgtttcatgacatgttagaca |
25527058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 441
Target Start/End: Original strand, 25515206 - 25515456
Alignment:
| Q |
193 |
gaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagttt---aggatgagacctgaaacttgcaatgctcttttggaggtattgct |
289 |
Q |
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||||||| ||||| || ||||||| |||| ||||||||||||||| ||||| | | |||||||||||||||||||||| ||| ||| ||| ||||| |
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| T |
25515206 |
gaagagagaaggaggctatggagtgttataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttgacggttttgct |
25515305 |
T |
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| Q |
290 |
taagcatggaaagaaaactgaggcttgggactttgttttatgacatgttagacatgcacaagcctacaagtttttctgctgtgaattctgacaattattt |
389 |
Q |
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| T |
25515306 |
ctcgtctggaaaaaaaactgaggcttgggac-ttgtttcatgacatgttagacaatcacacacctcccacttttcatggtgttgactctaacacttttat |
25515404 |
T |
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| Q |
390 |
tgtgatggtcaatgaatgcctaaagcttgttaaggtcgatgatgcccttgca |
441 |
Q |
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| T |
25515405 |
tgtgatggtcaatgaatgcttcaagcttggtaaggttgatgaagcccttgca |
25515456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 441
Target Start/End: Complemental strand, 25535255 - 25534992
Alignment:
| Q |
177 |
tggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaatgctcttt |
276 |
Q |
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| T |
25535255 |
tggttttttgagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctct |
25535156 |
T |
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| Q |
277 |
tggaggtattgcttaagcatggaaagaaaactgaggcttgggactttgttttatgacatgttagacatgcacaagcctacaagtttttctgctgtgaatt |
376 |
Q |
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| T |
25535155 |
tggagattttgctcaggtttggaaaaaaaaccgaggcttgggac-ttgtttcatggcatgttagacaatcatacacctcccacttttcatgctgtcaact |
25535057 |
T |
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| Q |
377 |
ctgacaattattttgtgatggtcaatgaatgcctaaagcttgttaaggtcgatgatgcccttgca |
441 |
Q |
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| T |
25535056 |
ctgacacttttattttgatggtcgatgaatgcttgaagcttggtaagattgatgaagcccttgca |
25534992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 77 - 317
Target Start/End: Original strand, 43223687 - 43223927
Alignment:
| Q |
77 |
tcttcaacttggaaatttagataaggctaatcagctttttgatgatcttaaaatgcggtgtctggtttatgatagtgttgtgaatgccacattcatggaa |
176 |
Q |
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|||| ||||||| ||||| |||||||||||| ||||||||||||| ||||| ||||| ||||||||| ||||||| ||||| || | ||||||| |
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| T |
43223687 |
tcttgaacttggtaatttggataaggctaatgagctttttgatgagcttaagggaaggtgtagtgtttatgatggtgttgtaaatgctacttacatggaa |
43223786 |
T |
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| Q |
177 |
tggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaatgctcttt |
276 |
Q |
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|||||||||||| |||||||||| ||||| || ||||| || ||| | || || || | | | |||||||||||| ||||| |||||| |||| ||| | |
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| T |
43223787 |
tggttttttaagcagggaagagataaggaggctatggattcgtataagtctttcatggatcgcgagtttaggatgacacctgcaacttgtaatgttctgt |
43223886 |
T |
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| Q |
277 |
tggaggtattgcttaagcatggaaagaaaactgaggcttgg |
317 |
Q |
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| T |
43223887 |
tggaggttttgcttaagcatgataagaaaaaggaggcttgg |
43223927 |
T |
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