View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_11 (Length: 475)
Name: NF14269_low_11
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 41711391 - 41710944
Alignment:
| Q |
18 |
attacaatatagcacaacctatttgaggcaaaatttagttttaatggtcttggcttggtgaccatacagaggagataacattatgtaacggtgactaatg |
117 |
Q |
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| T |
41711391 |
attacaatatagcacaacctatttgaggcaaaatttagttttaatggtcttggcttggtgaccatacagaggagataacattatgtaacggggactaatg |
41711292 |
T |
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| Q |
118 |
ataatacttttgttttcattgaaaatgatttgtcgataattccattggaatcgaaagactgaaaaatgtctatccaattcaattcacacttgaaaaatat |
217 |
Q |
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| T |
41711291 |
ataatacttttgttttcattgaaaatgatttgtcgataattccattggaatcgaaagactgaaaaatgtctatccaattcaattcacacttgaaaaatat |
41711192 |
T |
|
| Q |
218 |
tcgaagtgtcatacacgtaaatgtgggacacctctcgtaatccatcggttacacttttaatactacatcttatcttattatattgtaagagacaattttg |
317 |
Q |
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| T |
41711191 |
tcgaagtgt----cacgtaaatgtgggacacctctcgtaatccatcggttacacttttaatactacatcttatcttattatattgtaagagacaattttg |
41711096 |
T |
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| Q |
318 |
taaacaaaagttgatgtattttgtttaaaattagaccaaaaacatcggg--nnnnnnngttgaatatggtacatcaattttcttttagaagtcttctcca |
415 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41711095 |
taaacaaaagttgatgtattttgtctaaaattagaccaaaaacatcgggtttttttttgttgaatatggtacatcaattttcttttagaagtcttctcca |
41710996 |
T |
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| Q |
416 |
aatacttcatttcaactcattccattaatgattggtttgatttttcatctca |
467 |
Q |
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| T |
41710995 |
aatacttcatttcaagtcattccattaatggttggtttgatttttcatctca |
41710944 |
T |
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