View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_14 (Length: 406)
Name: NF14269_low_14
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_14 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 38003172 - 38003575
Alignment:
| Q |
1 |
ttttgtgttttcttttatttacctccaaaaccactagacatagcctctgttttctccaaaccatgtgtgnnnnnnnatcttgctagcacctggtatcttg |
100 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
38003172 |
ttttgttttttcttttatttatctccaaaaccactagacatagcctctgttttctccaaaccatgtgt--ttttttatcttgctagctcctggtatcttg |
38003269 |
T |
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| Q |
101 |
ttccactgatcaatcttggaatgtccatataaataagaccaaccatcactccttttttcttcatcaatcaatcaacaaactcactttcatatttaccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38003270 |
ttccactgatcaatcttggaatgtccatataaataagaccaaccatcactccttttttcttcatcaatcaatcaacaaactcactttcatatttaccaaa |
38003369 |
T |
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| Q |
201 |
caacactatctacatcttaatttgatatccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatgatggctgcaagtgttggagttgtggag |
300 |
Q |
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| T |
38003370 |
caacactatctatatcttaatttgatatccaaaaatcatgaatcgtgcaacagcaacaagcaaagcatggatggtggctgcaagtgttggagttgtggaa |
38003469 |
T |
|
| Q |
301 |
gctttgaaagaccaagctggtatttgcagatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatgtctcaagcaaaga |
400 |
Q |
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||||||||||| |||||||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38003470 |
gctttgaaagatcaagctggtatttgtaggtggaattatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaaga |
38003569 |
T |
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| Q |
401 |
atttct |
406 |
Q |
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|||||| |
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| T |
38003570 |
atttct |
38003575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 170 - 406
Target Start/End: Original strand, 38031589 - 38031826
Alignment:
| Q |
170 |
aatcaacaaactcactttcatatttaccaaacaacactatctacatcttaattt-gatatccaaaaatcatgaatcgtgcaacagcaacaagcaaagcct |
268 |
Q |
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||||||||| || | |||| |||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38031589 |
aatcaacaatcttattttcttatttaccaaacaacactgtctacttctaaattttgatatccaaaaatcatgaatcgtgcaacagcaacaagcaaagcat |
38031688 |
T |
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| Q |
269 |
ggatgatggctgcaagtgttggagttgtggaggctttgaaagaccaagctggtatttgcagatggaactatggtttaagacaagctcaacaacaccttaa |
368 |
Q |
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| T |
38031689 |
ggatggtggctgcaagtgttggagttgtggaggctttgaaagaccaagctggtatttgcagatggaactatggtttaagacaagctcaacaacaccttaa |
38031788 |
T |
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| Q |
369 |
aaaccgtgttagatcaatgtctcaagcaaagaatttct |
406 |
Q |
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| T |
38031789 |
aaaccgtgttagatcaatttctcaagcaaagaatttct |
38031826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 229 - 406
Target Start/End: Original strand, 38024909 - 38025086
Alignment:
| Q |
229 |
ccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatgatggctgcaagtgttggagttgtggaggctttgaaagaccaagctggtatttgca |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| || | |
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| T |
38024909 |
ccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatggtggctgcaagtgttggagttgtggaagctttgaaagatcaagctggtatctgta |
38025008 |
T |
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| Q |
329 |
gatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatgtctcaagcaaagaatttct |
406 |
Q |
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| T |
38025009 |
ggtggaactatgctttaagacaagctcaacaacaccttaaaaaccgtgctaaatcaatgtctcaagcaaagaatttct |
38025086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 38024824 - 38024870
Alignment:
| Q |
167 |
atcaatcaacaaactcactttcatatttaccaaacaacactatctac |
213 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
38024824 |
atcaatcaacaatctcattttcatatttaccaaacaacactatctac |
38024870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 316
Target Start/End: Original strand, 38033799 - 38033834
Alignment:
| Q |
281 |
caagtgttggagttgtggaggctttgaaagaccaag |
316 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
38033799 |
caagtgttggagttgtggaggctttgaaagatcaag |
38033834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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