View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_20 (Length: 354)
Name: NF14269_low_20
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 4903707 - 4903371
Alignment:
| Q |
1 |
atactcggacctcaacacaagcaactttctcacgcacaaaaagaatatccatctcgatgtgctttgaatggggttgtcggaaggataaactacacttaac |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4903707 |
atactcggtcctcaacacaagcaactttctcacgcacaaaaagaatatccatctcgatgtgctttgaacggggttgtcggaaggataaactacacttaac |
4903608 |
T |
|
| Q |
101 |
attatttggctctcactagtgtggtttatatggaaatagagaaacatgcgaatttttcagcataaagaggaataattacaatttttaggcnnnnnnngtt |
200 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |
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| T |
4903607 |
attatttggctctcacttgtgtggtttatatgaaaatagagaaacatgcgaatttttcagcataaagaggaatatttacaattgttaggcaaaaaaagtt |
4903508 |
T |
|
| Q |
201 |
aagcttaattaattttgatggttgaagtcgagatatgctaccttcgactctgactattatttttggaggcataatcctaaaaatgaataacaaactcctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903507 |
aagcttaattaattttgatggttgaagtcgagatatgctactttcgactttaactataatttttggaggcataatcctaaaaatgaataacaaactcctt |
4903408 |
T |
|
| Q |
301 |
tatctttctctaacctcgttattctaaatgaataaca |
337 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
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| T |
4903407 |
tatctttctcgaacctcgttattctaaatgaataaca |
4903371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 96 - 337
Target Start/End: Original strand, 4646724 - 4646964
Alignment:
| Q |
96 |
ttaacattatttggctctcactagtgtggtttatatggaaatagagaaacatgcgaatttttcagcataaagaggaataattacaatttttaggcnnnnn |
195 |
Q |
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||||||||||||| |||||||| ||||| | |||||||||| ||||||| | |||||| ||| ||||||| || ||| |||||||||||| || |
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| T |
4646724 |
ttaacattatttgtctctcactggtgtgctctatatggaaagagagaaataggcgaatctttgagcataaggaagaacgtttacaatttttatgcaaaaa |
4646823 |
T |
|
| Q |
196 |
nngttaagcttaattaattttgatggttgaagtcgagatatgctaccttcgactctgactattatttttggaggcataatcctaaaaatgaataacaaac |
295 |
Q |
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|||||| || ||| |||||| |||||||||| |||||||||||| ||||||| ||| ||| |||||| |||||||||||||||| |||||||| ||| |
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| T |
4646824 |
g-gttaagttttattcattttggtggttgaagttgagatatgctacattcgactttgattataattttttgaggcataatcctaaatatgaataattaac |
4646922 |
T |
|
| Q |
296 |
tcctttatctttctctaacctcgttattctaaatgaataaca |
337 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
4646923 |
tcctttatctttctctaacttcgttattctaaacgaataaca |
4646964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4880647 - 4880579
Alignment:
| Q |
1 |
atactcggacctcaacacaagcaactttctcacgcacaaaaagaatatccatctcgatgtgctttgaat |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4880647 |
atactcggacctcaacacaagcaactttctcacgcacaaaatgaatatccatctcgatgtgctttgaat |
4880579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 14957232 - 14957378
Alignment:
| Q |
96 |
ttaacattatttggctctcactagtgtggtttatatggaaatagagaaacatgcgaatttttcagcataaagaggaataattacaatttttaggcnnnnn |
195 |
Q |
| |
|
|||||||||||| | | ||| | |||||| |||||||| | ||||||||| |||||| |||| ||||| |||||| |||||||||||||| || |
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| T |
14957232 |
ttaacattattttgttttcagtggtgtggactatatggacagagagaaacaagcgaatctttccacataaggaggaacaattacaattttta-gcgaaaa |
14957330 |
T |
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| Q |
196 |
nngttaagcttaattaattttgatggttgaagtcgagatatgctacct |
243 |
Q |
| |
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||||||||| ||| |||||||| |||||| | |||||||||||||| |
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| T |
14957331 |
aagttaagcttcattcattttgatagttgaaattgagatatgctacct |
14957378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 3955381 - 3955344
Alignment:
| Q |
24 |
actttctcacgcacaaaaagaatatccatctcgatgtg |
61 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |
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| T |
3955381 |
actttctcacgcacaaaatgtatatccatctcgatgtg |
3955344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 47249481 - 47249518
Alignment:
| Q |
24 |
actttctcacgcacaaaaagaatatccatctcgatgtg |
61 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |
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| T |
47249481 |
actttctcacgcacaaaatgtatatccatctcgatgtg |
47249518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 10533391 - 10533428
Alignment:
| Q |
24 |
actttctcacgcacaaaaagaatatccatctcgatgtg |
61 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |
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| T |
10533391 |
actttctcacgcacaaaatgtatatccatctcgatgtg |
10533428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 22949766 - 22949729
Alignment:
| Q |
24 |
actttctcacgcacaaaaagaatatccatctcgatgtg |
61 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |
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|
| T |
22949766 |
actttctcacgcacaaaatgtatatccatctcgatgtg |
22949729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39261493 - 39261537
Alignment:
| Q |
20 |
agcaactttctcacgcacaaaaagaatatccatctcgatgtgctt |
64 |
Q |
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||||||||| |||||||||||| |||||| |||||| |||||||| |
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| T |
39261493 |
agcaactttttcacgcacaaaatgaatattcatctcaatgtgctt |
39261537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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