View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_21 (Length: 352)
Name: NF14269_low_21
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 41243476 - 41243133
Alignment:
| Q |
1 |
tttggaggccagccaatagatggaaatataaatgaccataatggtgatgagttgttcatatttttaaaatttggataaacgtctattggagtaaagctaa |
100 |
Q |
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| T |
41243476 |
tttggaggccagccaatagatggaaatataaatgaccataatggtgatgagttgttcatatttttaaaatttggataaacgtctattggagtaaagctaa |
41243377 |
T |
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| Q |
101 |
ggctagtagcttaataatgaagaaaaatgtgtgtgaaactagtattataaataaatataaagggccatgtagacttgcatcgtgcaaccccactccattt |
200 |
Q |
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| T |
41243376 |
ggctagtagcttaataatgaagaaaaatgtgtgtgaaactagtactataaataaatataaagggccatgtagacttgcatcgtgcaaccccactccattt |
41243277 |
T |
|
| Q |
201 |
tgtttggaaattaattatagtggtcaacctttgattgtgccacctattttttccccttaaagcaataggcaaattagacattgactttaatattttgcca |
300 |
Q |
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| T |
41243276 |
tgtttggaaattaattatagtggtcaacctttgattgtgccacctattttttccccttaaagcaataggcaaattagacattgactttaatattttgcca |
41243177 |
T |
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| Q |
301 |
atcatggttgg--ggttgtcaatatgaagggagaaattgaaagg |
342 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41243176 |
atcatggttggtcggttgtcaatatgaagggagaaattgaaagg |
41243133 |
T |
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