View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14269_low_23 (Length: 343)
Name: NF14269_low_23
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_23 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 3778099 - 3777771
Alignment:
| Q |
1 |
gtgagtggtcagaaattcttgtgggttttgagagaacctagtaattctataaatgtaggaaaccatagtgctaccaatgatcatgatgacccattaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3778099 |
gtgagtggtcagaaattcttgtgggttttgagagaacctagtaattctattaatgtaggaaaccatagtgctaccaatgatcatgacgacccattaaagt |
3778000 |
T |
|
| Q |
101 |
ttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaaccggtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3777999 |
ttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaaccggtgg |
3777900 |
T |
|
| Q |
201 |
atttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgttttcagagcaaagaatgaatgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3777899 |
atttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgttttcagagcaaagaatgaatgct |
3777800 |
T |
|
| Q |
301 |
atgttgttagagggactcggagttggttt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
3777799 |
atgttgttagagggactcggagttggttt |
3777771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 3700998 - 3701295
Alignment:
| Q |
9 |
tcagaaattcttgtgggttttgagagaacctagtaattctataaatgtaggaaaccatagtgctacca------atgatcatgatgacccattaaagttt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||| | ||||| || |||||| |||||||| |
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|
| T |
3700998 |
tcagaaattcttgtgggttttgagagaacctagtaattctaaagatgtaaattaccaaagtgctacaattggaaatgataataatgacctattaaagtac |
3701097 |
T |
|
| Q |
103 |
ttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaaccggtggat |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || || ||||||| || |||| |||||||||||||| |
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|
| T |
3701098 |
ttaccacatgggttcttagagagaaccaaagaacaagggttagttgttcctctttgggcaccacaaaccaaaatccttagtcacacttcaaccggtggat |
3701197 |
T |
|
| Q |
203 |
ttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgttttcagagcaaagaatgaatgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||| |
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|
| T |
3701198 |
ttttaacacattgtggttggaattcgacacttgagagtatcgtgttaggagtgccaatgataacatggccattatttggcgagcaaagaatgaatgct |
3701295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 2 - 302
Target Start/End: Original strand, 3707758 - 3708064
Alignment:
| Q |
2 |
tgagtggtcagaaattcttgtgggttttgagagaacctagtaattctataaatgtaggaaaccatagtgctacca------atgatcatgatgacccatt |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| || | | |||| | | ||||| || |||||| ||| |
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|
| T |
3707758 |
tgagtggtcagaaattcttgtgggttttgagagaacctagtaaatctaaagatgtagattacaaaattgcttcaataggaaatgatgattatgacctatt |
3707857 |
T |
|
| Q |
96 |
aaagtttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaacc |
195 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| || || || |||||||||| |||| |||||| |
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|
| T |
3707858 |
aaagtacttaccacatgggttcttagatagaaccaaagaacaagggttagttgttcctctttgggcaccacaaaccaaaatcctaagtcacaattcaaca |
3707957 |
T |
|
| Q |
196 |
ggtggatttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgttttcagagcaaagaatga |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||||||| || |||| ||||| |
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|
| T |
3707958 |
ggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtgatcaaataatga |
3708057 |
T |
|
| Q |
296 |
atgctat |
302 |
Q |
| |
|
||||||| |
|
|
| T |
3708058 |
atgctat |
3708064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 3770437 - 3770131
Alignment:
| Q |
2 |
tgagtggtcagaaattcttgtgggttttgagagaacctagtaattctataaatgtaggaaaccatagtgctacca------atgatcatgatgacccatt |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| || | | |||| | | ||||| || |||||| ||| |
|
|
| T |
3770437 |
tgagtggtcagaaattcttgtgggttttgagagaacctagtaaatctaaagatgtagattacaaaattgcttcaataggaaatgatgataatgacctatt |
3770338 |
T |
|
| Q |
96 |
aaagtttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaacc |
195 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| || || || |||||||||| |||| |||||| |
|
|
| T |
3770337 |
aaagtacttaccacatgggttcttagaaagaaccaaagaacaagggttagttgttcctctttgggcaccacaaaccaaaatcctaagtcacaattcaaca |
3770238 |
T |
|
| Q |
196 |
ggtggatttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgttttcagagcaaagaatga |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
3770237 |
ggtggatttttaacacattgtggttggaattcaacacttgagagtattgtgtcgggagtgccaatggtaacttggccattgtttggtgatcaaagaatga |
3770138 |
T |
|
| Q |
296 |
atgctat |
302 |
Q |
| |
|
||||||| |
|
|
| T |
3770137 |
atgctat |
3770131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 33005334 - 33005036
Alignment:
| Q |
2 |
tgagtggtcagaaattcttgtgggttttgagagaacctagtaattctataaatgtaggaaaccatagtgctaccaatgatcatgatgacccattaaagtt |
101 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||| || | |||| |||||||||||| ||||| ||| ||||| | |
|
|
| T |
33005334 |
tgagtggtcaaaaattcttgtgggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatga---------ccctttaaaata |
33005244 |
T |
|
| Q |
102 |
tttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaaccggtgga |
201 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| ||||| ||| |||||||||| || |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
33005243 |
cttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagccacacttcaactggtgga |
33005144 |
T |
|
| Q |
202 |
tttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgttttcagagcaaagaatgaatgcta |
301 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
33005143 |
tttttaacacattgtggttggaattcaacactcgagagcattgcgtcgggagtgccaatgataacttggccgttgtttggcgagcaaagattgaatgcta |
33005044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 76 - 302
Target Start/End: Original strand, 3719347 - 3719573
Alignment:
| Q |
76 |
aatgatcatgatgacccattaaagtttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaa |
175 |
Q |
| |
|
|||||| || |||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| || || || || |
|
|
| T |
3719347 |
aatgatgataatgacctattaaagttcttaccacatgggttcttagagagaaccaaagaacaagggctagttgttccactttgggcaccacaaaccaaag |
3719446 |
T |
|
| Q |
176 |
tcctaagccacatttcaaccggtggatttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccatt |
275 |
Q |
| |
|
|||| || |||| |||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
3719447 |
tcctgagtcacacttcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccatt |
3719546 |
T |
|
| Q |
276 |
gttttcagagcaaagaatgaatgctat |
302 |
Q |
| |
|
|||| || ||||||||||||||||| |
|
|
| T |
3719547 |
gtttggtgatcaaagaatgaatgctat |
3719573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 1963436 - 1963578
Alignment:
| Q |
98 |
agtttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaaccgg |
197 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| ||||||||| | |||||||| | ||||| || |||| ||||||||| || |||| ||| | || |
|
|
| T |
1963436 |
agtttttaccatctgggtttttggagagaaccaaggaacaagggatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattgg |
1963535 |
T |
|
| Q |
198 |
tggatttttaacacattgtggttggaattcgacactggagagt |
240 |
Q |
| |
|
||| ||||| | ||||||||||||||||| || || |||||| |
|
|
| T |
1963536 |
tgggtttttgtctcattgtggttggaattcaacccttgagagt |
1963578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 3719274 - 3719323
Alignment:
| Q |
9 |
tcagaaattcttgtgggttttgagagaacctagtaattctataaatgtag |
58 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||||||| | |||||| |
|
|
| T |
3719274 |
tcagaaatttttgtgggttttgagagaaccaaggaattctaaagatgtag |
3719323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 1969062 - 1969190
Alignment:
| Q |
112 |
gggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccacatttcaaccggtggatttttaacac |
211 |
Q |
| |
|
|||||||| ||||||||||| || |||| || ||| || | | ||||| ||||||| |||||||||||| |||| |||| |||||||| || || | |
|
|
| T |
1969062 |
gggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactc |
1969161 |
T |
|
| Q |
212 |
attgtggttggaattcgacactggagagt |
240 |
Q |
| |
|
||||||| |||||||| || || |||||| |
|
|
| T |
1969162 |
attgtggctggaattcaacccttgagagt |
1969190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 309
Target Start/End: Complemental strand, 11794 - 11568
Alignment:
| Q |
83 |
atgatgacccattaaagtttttaccacaagggttcttagagagaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaag |
182 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||| ||||||||||| |||| |||||| |||||||| ||| |||||| || || || ||||| | || |
|
|
| T |
11794 |
atgatgaccctttaaattttttaccaaaagggtttttagagagaactaaaggacaaggattagttgtacctaattgggcacctcaaacacaaattttgag |
11695 |
T |
|
| Q |
183 |
ccacatttcaaccggtggatttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgttttca |
282 |
Q |
| |
|
|| |||| |||| |||||| || ||||||||||||||||| || |||||| | ||||| || ||||| ||||| ||||||| |||||| | |
|
|
| T |
11694 |
tcatgggtcaattggtgcatttttgactcattgtggttggaattcagttcttgagagtgtagtgttgggtgtgcctatgattgcttggcctttgtttgct |
11595 |
T |
|
| Q |
283 |
gagcaaagaatgaatgctatgttgtta |
309 |
Q |
| |
|
||||||| ||| |||||| | |||||| |
|
|
| T |
11594 |
gagcaaaaaattaatgctgttttgtta |
11568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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