View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_26 (Length: 332)
Name: NF14269_low_26
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 25321117 - 25320870
Alignment:
| Q |
18 |
aaacggtaccatat--ttttcaaatttatgataattattcaattcaaccttcctatttctcatatgtatggtatgtctttgggtttttcaggccaaaaaa |
115 |
Q |
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| T |
25321117 |
aaacggtaccatatatttttcaaatttatgataattattcaattcaaccttcctatttctcatttgtatggtatgtctttggatttt-caggccaaaaaa |
25321019 |
T |
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| Q |
116 |
catctagtaattcatcgttggatgattggtctagggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtacttctaattcgattt |
215 |
Q |
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| T |
25321018 |
catttagtaattcatcgttggatgattggtctagggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtacttctaattcgattt |
25320919 |
T |
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| Q |
216 |
ccaactataaagtttttattatatctatgatgttacaaaccttcatatt |
264 |
Q |
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| T |
25320918 |
ccaactataaagtttttattatatctatgatgttacaaaccttcatatt |
25320870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 25326782 - 25326661
Alignment:
| Q |
104 |
caggccaaaaaacatctagtaattcatcgttggatgattggtctagggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtactt |
203 |
Q |
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| T |
25326782 |
caggccatagaacatttcgtaattcatccttgaatgattggtctagggtgaagtacttgcataaatacattgagaccatagctaatgaaataaggtactt |
25326683 |
T |
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| Q |
204 |
ctaattcgatttccaactataa |
225 |
Q |
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| T |
25326682 |
ctactttgattttcaaatataa |
25326661 |
T |
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