View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_33 (Length: 260)
Name: NF14269_low_33
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 4143013 - 4143247
Alignment:
| Q |
12 |
caaaggattttgagggtgttttatccattctattaacttagggtctgatagatccttcggcatagctaagtattgaacttggtgtgttttttcattgatt |
111 |
Q |
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| T |
4143013 |
caaaggattttgagggtgttttatccattctattaacttagggtctgatagatccttcggcatagctaagtattgaacttggtgtgttttttcattgatt |
4143112 |
T |
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| Q |
112 |
aatcctgtatacaacatatatataacaggttgttctccagggactattgtggctgagcctgagaagcaacttgtttcaccagcacaagttggttcaatag |
211 |
Q |
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| T |
4143113 |
aatcctgtatacaacatatatataacaggttgttctccagggactattgtggctgagcctgagaagcaacttgtttcaccagcacaagttggttcaatag |
4143212 |
T |
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| Q |
212 |
catgattcaaatgagtccaatttatgagatctttg |
246 |
Q |
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| T |
4143213 |
catgattcaaatgagtccaatttatgagatctttg |
4143247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 4129737 - 4129781
Alignment:
| Q |
198 |
agttggttcaatagcatgattcaaatgagtccaatttatgagatc |
242 |
Q |
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| T |
4129737 |
agttggtacaatagcatcatttagatgagtccaatttatgagatc |
4129781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 4138453 - 4138497
Alignment:
| Q |
198 |
agttggttcaatagcatgattcaaatgagtccaatttatgagatc |
242 |
Q |
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| T |
4138453 |
agttggtacaatagcatcatttagatgagtccaatttatgagatc |
4138497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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