View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14269_low_35 (Length: 238)

Name: NF14269_low_35
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14269_low_35
NF14269_low_35
[»] chr4 (1 HSPs)
chr4 (84-148)||(35293558-35293622)
[»] chr6 (4 HSPs)
chr6 (84-160)||(20717832-20717908)
chr6 (177-220)||(20717667-20717710)
chr6 (165-220)||(20717966-20718025)
chr6 (165-193)||(20717622-20717650)
[»] chr5 (1 HSPs)
chr5 (14-51)||(22977042-22977079)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 35293622 - 35293558
Alignment:
Q  84 actagttcaaatgcatgatacatgtattatctataagttgaagcccacatgtttctccaactgat 148  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  35293622 actagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaactgat 35293558  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 20717832 - 20717908
Alignment:
Q  84 actagttcaaatgcatgatacatgtattatctataagttgaagcccacatgtttctccaactgatgataatggtaat 160  Q
    ||||||||||||||| ||| |||||  ||||||||||||||| ||||||| |||||| |||| ||||||||||||||    
T  20717832 actagttcaaatgcaagatgcatgtcctatctataagttgaatcccacatatttctctaacttatgataatggtaat 20717908  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 20717667 - 20717710
Alignment:
Q  177 atccattcatcatgttcgatcgaaggaagtttatttgatttaat 220  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  20717667 atccattcatcatgttcgatcaaaggaagtttatttgatttaat 20717710  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 20717966 - 20718025
Alignment:
Q  165 caaaagtccttcat--ccattcatcatgttcgatcgaagga--agtttatttgatttaat 220  Q
    ||||||||||||||  ||| ||||||||||||||| |||||  |||||||||||||||||    
T  20717966 caaaagtccttcatatccactcatcatgttcgatcaaaggaagagtttatttgatttaat 20718025  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 20717622 - 20717650
Alignment:
Q  165 caaaagtccttcatccattcatcatgttc 193  Q
    |||||||||||||||||||||||||||||    
T  20717622 caaaagtccttcatccattcatcatgttc 20717650  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 22977079 - 22977042
Alignment:
Q  14 agaaaatattattatcccttgttaataaatacaccagc 51  Q
    ||||||||||| || |||||||||||||||||||||||    
T  22977079 agaaaatattactagcccttgttaataaatacaccagc 22977042  T

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