View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14269_low_5 (Length: 601)
Name: NF14269_low_5
Description: NF14269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14269_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Complemental strand, 31903206 - 31902647
Alignment:
| Q |
16 |
ttatggaactctcttgtgttatctaggttaatagcttgtaactacacatgtttggtgtatatataattttgatgctttggtgtttactgcacattgttgt |
115 |
Q |
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| T |
31903206 |
ttatggaactctcttgtgttatctaggttaatagcttgtaactatacatgtttagtgtatatataattttgatgctttggtgtttactgcacattgttgt |
31903107 |
T |
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| Q |
116 |
atctatttgtttgtggaagtaacctgagaaaatggatgtttgtagtttattatttggtttcagtttgagaagaagnnnnnnncttgtgnnnnnnnnnnnn |
215 |
Q |
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| T |
31903106 |
attgatttgtttgtggaagtaacctgagaaaatggatgtttgtggtttatcatttggtttcagtttgagaaaaa---aatatcttgagttttttcatttt |
31903010 |
T |
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| Q |
216 |
nngaaaataaatgtgagaaaatatcttctgcaaatgtttgtttatttcacccagtcacttgttgaatttgtcaagggaaaacagagaacagttcaatcaa |
315 |
Q |
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| T |
31903009 |
ttgaaaataaatgtgagaaaatatcttctgcaaatgtttgtttattttacc-agtcacttgttgaatttgtcaagggaaaacagagaacagttccatcac |
31902911 |
T |
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| Q |
316 |
ctctggtagacttggatgatcatgatcctaagtcctcaaacatcaagcttaaattgatggctataggtagcatgtgttggcttgattagaatgacgtttt |
415 |
Q |
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| T |
31902910 |
ccctggtagacttggatgatc------ctaagtcctcaaacatcaagcataaattgatggctatagttagcatgtgttggcttgattagaatgacatttt |
31902817 |
T |
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| Q |
416 |
gtgctgcttaccatttacctatgattggcttttttatttggtgtatggtattctcgttcgagttgatcgatttaattgcgtaggaaacacataattaatg |
515 |
Q |
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| T |
31902816 |
gtgttgcttaccatttacctatgattggcttttttatttggtgtatgatattctcggtcgagttgatcgatttaattacgtaggaaacacataattaatg |
31902717 |
T |
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| Q |
516 |
gagagattggtccttgcaaccttagttcataggcattttgatgtccatggttagttttttggcgcctatg |
585 |
Q |
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| T |
31902716 |
gagagattggtccttgcaaccttagttcataggcattttgatgtccatggttagttttttagtgcctatg |
31902647 |
T |
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