View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_high_11 (Length: 363)
Name: NF14271_high_11
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 43514063 - 43514290
Alignment:
| Q |
10 |
ataattctctttcattttaaaagaattgttttaataaaaaagacttaataaaaatgaatttggggatttaggttttcttgaaggagccaattcatgtttc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43514063 |
ataattctctttcattttaaaagaattgttttaataaaaaagacttaataaaaatgaatttggggatttaggttttcttgaaggagccaattcatgtttc |
43514162 |
T |
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| Q |
110 |
tcgcatactgaattcactcaaggtacaagagtatctcgaagcccactcgtatgatgaatctaccaagaagatacggggatgaagatcaagcatgacataa |
209 |
Q |
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| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43514163 |
ttgcatactgaaaacactcaaggtacaagagtatctcgaagcccactcgtatgatgaatctaccaagaagatatggggatgaagatcaagcatgacataa |
43514262 |
T |
|
| Q |
210 |
ttttttattgaacacaaatattgacaga |
237 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
43514263 |
ttttttattgaacacaaatattgacaga |
43514290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 43514355 - 43514400
Alignment:
| Q |
302 |
gcaatgttgcgatctccaatttcattgtgagaaagacggtggaaaa |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
43514355 |
gcaatgttgcgatctccaatttcattgtgagaaagacggtgaaaaa |
43514400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 44892199 - 44891972
Alignment:
| Q |
10 |
ataattctctttcattttaaaagaattgttttaataaaaaagacttaataaaaatgaatttggggatttaggttttcttgaaggagccaattcatgtttc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44892199 |
ataattctctttcattttaaaagaattgttttaataaaaaagacttaataaaaatgaatttggggatttaggttttcttgaaggagccaattcatgtttc |
44892100 |
T |
|
| Q |
110 |
tcgcatactgaattcactcaaggtacaagagtatctcgaagcccactcgtatgatgaatctaccaagaagatacggggatgaagatcaagcatgacataa |
209 |
Q |
| |
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| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44892099 |
ttgcatactgaaaacactcaaggtacaagagtatctcgaagcccactcgtatgatgaatctaccaagaagatatggggatgaagatcaagcatgacataa |
44892000 |
T |
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| Q |
210 |
ttttttattgaacacaaatattgacaga |
237 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
44891999 |
ttttttattgaacacaaatattgacaga |
44891972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 11146537 - 11146765
Alignment:
| Q |
10 |
ataattctctttcattttaaaagaattgttttaataaaaaagacttaataaaa-atgaatttggggatttaggttttcttgaaggagccaattcatgttt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11146537 |
ataattctctttcattttaaaagaattgttttaataaaaaagacttaataaaaaatgaatttcgggatttaggttttcttgaaggagccaattcatgttt |
11146636 |
T |
|
| Q |
109 |
ctcgcatactgaattcactcaaggtacaagagtatctcgaagcccactcgtatgatgaatctaccaagaagatacggggatgaagatcaagcatgacata |
208 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11146637 |
ctcgcatactgaaaacactcaaggtacaagagtatctcgaagcccactcgtatgatgaatctaccaagaagatatggggatgaagatcaagcatgacata |
11146736 |
T |
|
| Q |
209 |
attttttattgaacacaaatattgacaga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
11146737 |
attttttattgaacacaaatattgacaga |
11146765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 11146830 - 11146875
Alignment:
| Q |
302 |
gcaatgttgcgatctccaatttcattgtgagaaagacggtggaaaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11146830 |
gcaatgttgcgatctccaatttcattgtgagaaagacggtgaaaaa |
11146875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 44891907 - 44891862
Alignment:
| Q |
302 |
gcaatgttgcgatctccaatttcattgtgagaaagacggtggaaaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
44891907 |
gcaatgttgcgatctccaatttcattgtgagaaagacggtgaaaaa |
44891862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 26852684 - 26852912
Alignment:
| Q |
10 |
ataattctctttcattttaaaagaattgttttaataaaaaagacttaataaaa-atgaatttggggatttaggttttcttgaaggagccaattcatgttt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26852684 |
ataattctctttcattttaaaagaattgttttaataaaaaagacttaataaaaaatgaatttggggatttaggttttcttgaaggagccaattcatgttt |
26852783 |
T |
|
| Q |
109 |
ctcgcatactgaattcactcaaggtacaagagtatctcgaagcccactcgtatgatgaatctaccaagaagatacggggatgaagatcaagcatgacata |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26852784 |
ctcgcatactgaaaacactcaaggtacaagagtatctcgaagcccactcgtatgatgaatctaccaagaagatatggggatgaagatcaagcatgacata |
26852883 |
T |
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| Q |
209 |
attttttattgaacacaaatattgacaga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26852884 |
attttttattgaacacaaatattgacaga |
26852912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 26852977 - 26853022
Alignment:
| Q |
302 |
gcaatgttgcgatctccaatttcattgtgagaaagacggtggaaaa |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26852977 |
gcaatgttgcgatctccaatttcattgtgagaaagacggtgaaaaa |
26853022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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