View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14271_high_15 (Length: 353)
Name: NF14271_high_15
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 1466743 - 1466958
Alignment:
| Q |
16 |
aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1466743 |
aaagggtatggcattggattaaatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgacttccattgcacttaggagg |
1466842 |
T |
|
| Q |
116 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1466843 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaata |
1466942 |
T |
|
| Q |
216 |
tttttaagttggaatt |
231 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
1466943 |
ttttgaagttggaatt |
1466958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 35923210 - 35923398
Alignment:
| Q |
20 |
ggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtg |
119 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
35923210 |
ggtatggcattgaattacttacttacctggatggggtcaatgggtgatcatgaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtg |
35923309 |
T |
|
| Q |
120 |
cctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagt |
208 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
|
|
| T |
35923310 |
cttgcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccttccaattttagt |
35923398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 35 - 199
Target Start/End: Complemental strand, 5050661 - 5050497
Alignment:
| Q |
35 |
tacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtcta |
134 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||| | |
|
|
| T |
5050661 |
tacatacttacctggatggggtcaatggatgatcaaaaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgctcgcctaaggtgtt |
5050562 |
T |
|
| Q |
135 |
cccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc |
199 |
Q |
| |
|
| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5050561 |
ctcaagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc |
5050497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 1467094 - 1467148
Alignment:
| Q |
281 |
gcaatttcagttcaaaactgaactattcttttgtttcttttttaaagtagcaatt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1467094 |
gcaatttcagttcaaaactgaactattcatttgtttcttttttaatgtagcaatt |
1467148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 28838562 - 28838369
Alignment:
| Q |
16 |
aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg |
115 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28838562 |
aaagggtatggcattgtattatatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacttaggagg |
28838463 |
T |
|
| Q |
116 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
28838462 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaattttagtt |
28838369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 9450670 - 9450860
Alignment:
| Q |
16 |
aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
9450670 |
aaaggctatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcactttggagg |
9450769 |
T |
|
| Q |
116 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatctta |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9450770 |
ggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaatctta |
9450860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 17724519 - 17724715
Alignment:
| Q |
16 |
aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
17724519 |
aaagggtatggtattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggagg |
17724618 |
T |
|
| Q |
116 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaa |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
17724619 |
ggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctctaatcttattttaa |
17724715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 19025748 - 19025944
Alignment:
| Q |
16 |
aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
19025748 |
aaagggtatggtattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggagg |
19025847 |
T |
|
| Q |
116 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaa |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
19025848 |
ggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctctaatcttattttaa |
19025944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 28830597 - 28830399
Alignment:
| Q |
16 |
aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28830597 |
aaagggtatggcattggattatatacttacctggatggggtcaatggatgatcaagaaggtccatggcctagaaaggtgacctccattgcacttaggagg |
28830498 |
T |
|
| Q |
116 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaat |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||||||| |
|
|
| T |
28830497 |
ggtgcttttctaaggtctacccaagtggtggagcctacatcataatttgttgttgtgggggcctgcgttcgcgcggccccttccaattttagtttaaat |
28830399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 26640704 - 26640865
Alignment:
| Q |
34 |
ttacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtct |
133 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
26640704 |
ttacttacttacctggatggggtcgatgggtgatcaagaaggcccatggcctagacaagtgacctccattgcacttaggaggggtgctagtctaaggtct |
26640803 |
T |
|
| Q |
134 |
acccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc |
195 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26640804 |
acccaagtggtggaacctacatcataatttgttgcagtgggggcctgcgttcgcgcggcccc |
26640865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 20798914 - 20798757
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||| | |||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
20798914 |
acatacttacctggatggggtcaatgggtgatcaagaatgttcatggcctaggcaagtgacctccattgcacttaggaaaggtgctagcctaaggtctac |
20798815 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||| |
|
|
| T |
20798814 |
ccaagtggtggagcctacatcataatttgttgcag-cggggcttgcgttcgcgcagccc |
20798757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 19545565 - 19545404
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
19545565 |
acatacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaagtgacctccattgcactttggaggggtgctcttctaaggtctac |
19545466 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19545465 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct |
19545404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 19538911 - 19538748
Alignment:
| Q |
39 |
tacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccca |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||| |||||||||| | |||||||||||| | |
|
|
| T |
19538911 |
tacttacctggatggggtcaatgggtgatcacgaaggcccatggcctaggaaagtgacctccattgcactttggaggggtgctatcctaaggtctaccta |
19538812 |
T |
|
| Q |
139 |
agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19538811 |
agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat |
19538748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 47228519 - 47228675
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47228519 |
acatacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaggtgacctccattgcacttaggaggggtgtttttctaaggtctat |
47228618 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggc |
192 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
47228619 |
ccaagtggtggagcctacattataatttgttgctgagggggtctgcgttcgcgcggc |
47228675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 47465831 - 47465706
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
47465831 |
acatacttacctggatggggtcaatgggtgatcatgaaggcccatggcctagaaaggtggcctccattgcacttgggaggggtgcttttctaaggtctac |
47465732 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataat |
161 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
47465731 |
tcaagtggtggagcctacatcataat |
47465706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 19549885 - 19549755
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||| ||| | ||||||| || |
|
|
| T |
19549885 |
acatacatacctggacggggtcaatgggtgatcaataaggcccatgacctagacgagtgacttccattgcacttaggagggttgcttgtctaaggctcac |
19549786 |
T |
|
| Q |
136 |
ccaagtggtggag-cctacatcataatttgt |
165 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |
|
|
| T |
19549785 |
ccaagtggtggagacctacgtcataatttgt |
19549755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 19555081 - 19554968
Alignment:
| Q |
52 |
ggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtggtggagcct |
151 |
Q |
| |
|
||||||||||| ||||||| |||| ||||| |||||| || | |||||||||||||||||||| ||| ||||||| | ||||||||||||| |||| |
|
|
| T |
19555081 |
ggggtcaatggatgatcaaaaaggtccatgacctagacgagtaacctccattgcacttaggagggttgctggtctaaggcccacccaagtggtggtgcct |
19554982 |
T |
|
| Q |
152 |
acatcataatttgt |
165 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
19554981 |
acgtcataatttgt |
19554968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 19552029 - 19551972
Alignment:
| Q |
59 |
atgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggg |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
19552029 |
atgggtgatcaagaaggcccatgacctagacgagtgacctccattgcacttaggaggg |
19551972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 19242551 - 19242376
Alignment:
| Q |
20 |
ggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtg |
119 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
19242551 |
ggtatgacattgaattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtg |
19242452 |
T |
|
| Q |
120 |
cctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc |
195 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
19242451 |
ctagtctaaggtctacccaagtggtggagcctacatcataatttgttgcagcgggggcctgcgttcgcgcggcccc |
19242376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 9211530 - 9211371
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| || |||||||||| | || ||||| ||||||||||| |
|
|
| T |
9211530 |
acatacttacctggatggggtcaatgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcactttgaagaggtgctagcctaaggtctac |
9211431 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9211430 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc |
9211371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 38783792 - 38783978
Alignment:
| Q |
16 |
aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg |
115 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
38783792 |
aaagtgtatgacattggacaacatacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggagg |
38783891 |
T |
|
| Q |
116 |
ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat |
202 |
Q |
| |
|
||||||| |||||| | | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38783892 |
ggtgcctacttaaggtgttctcaagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat |
38783978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 9369955 - 9370137
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| || |||||||||| | |||||||| ||||||||||| |
|
|
| T |
9369955 |
acatacttacctggatggggtcaatgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcactttgaaggggtgctagcctaaggtctac |
9370054 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaatattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
9370055 |
ccaagtggtggagcctacatcataatatgttgtggttggggcttgcgttcgcgcggcccctcccaattttagtttaaatattt |
9370137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 12560131 - 12560287
Alignment:
| Q |
40 |
acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtcta-ccca |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||| |||||||||| |||| |
|
|
| T |
12560131 |
acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcactttggaggggtgctagcctaaggtctacccca |
12560230 |
T |
|
| Q |
139 |
agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
12560231 |
agtggtggagcctacatcataatttgttgccgtgggggtttgcgttcgcgcagcccc |
12560287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 35181989 - 35182152
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||| ||||||||||||| |||||||||| |||||||| | | |
|
|
| T |
35181989 |
acatacttacctggatggggtcaatggatgatcattaaggttcatggcctagattggtgacctccattgcactttggaggggtgctagtctaaggtgttc |
35182088 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc |
199 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35182089 |
tcaagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc |
35182152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 12556892 - 12557016
Alignment:
| Q |
44 |
acctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtgg |
143 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||||| | ||| ||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
12556892 |
acctggatggggtcaataggtgatcaagaaggctcatagcctaagacaatgacctccattgcactttggaggggtgctggcctaaggtctactcaagtgg |
12556991 |
T |
|
| Q |
144 |
tggagcctacatcataatttgttgc |
168 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
12556992 |
tggagcctacatcataatttgttgc |
12557016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 9937274 - 9937456
Alignment:
| Q |
38 |
atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccc |
137 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||| | | | |
|
|
| T |
9937274 |
atacttacctggatggggtcaatggatgatcatgaaggtccatggcctaggttggtgacctccattgcacttcggaggggtgcctatctaaggtgttctc |
9937373 |
T |
|
| Q |
138 |
aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaatattttt |
220 |
Q |
| |
|
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||| |
|
|
| T |
9937374 |
aagtagaacagcctacatcatagtttgttgctgtgggggcctgcgttcgcgcggccccttccaataatagtttaattattttt |
9937456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 9939644 - 9939807
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| | ||||||||| ||||| ||||||||||||| |||||||||||| ||||||| | | |
|
|
| T |
9939644 |
acatacttacctggatggggtcaatggatgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgcctacctaaggtgttc |
9939743 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc |
199 |
Q |
| |
|
||||| | | |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9939744 |
tcaagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggccctcttc |
9939807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 9945694 - 9945855
Alignment:
| Q |
38 |
atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccc |
137 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| | ||||||||| ||||| ||||||||||||| ||||||||| || ||||||| | | | |
|
|
| T |
9945694 |
atacttacctggatggggtcaatggacgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgtctgcctaaggtgttctc |
9945793 |
T |
|
| Q |
138 |
aagtgg---tggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccc |
196 |
Q |
| |
|
|||| | | ||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9945794 |
aagtagaacagcagcctacattataatttgttgctgtgggggcctgcgttcgcgtggccccc |
9945855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 3428013 - 3427899
Alignment:
| Q |
63 |
gtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtggtggagcctacatcataatt |
162 |
Q |
| |
|
|||||||||||||||||| | |||| |||| ||||||||||| | |||||||||| |||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
3428013 |
gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcaccttggaggggtgctagcttaaggtctgcccaagtggtggagtttacatcgtaatt |
3427914 |
T |
|
| Q |
163 |
tgttgctgtgggggc |
177 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
3427913 |
tgttgcagtaggggc |
3427899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 44089673 - 44089832
Alignment:
| Q |
36 |
acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac |
135 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |||||| |||||||||| ||||| ||||||||||||| |||||||||||| |||||||| | | |
|
|
| T |
44089673 |
acatacttacctggatggggtctatgagtgatcatgaaggctcatggcctaggttggtgacctccattgcactttggaggggtgcctatctaaggtgttc |
44089772 |
T |
|
| Q |
136 |
ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc |
195 |
Q |
| |
|
||||| | || ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44089773 |
tcaagtagaacagtctacatcataatttgttgctgagggggcctgcgttcgcgcggcccc |
44089832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 38052155 - 38052200
Alignment:
| Q |
149 |
cctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc |
194 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
38052155 |
cctacattataatttgttgttgtggaggcctgcgtgcgcgcggccc |
38052200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 7959702 - 7959585
Alignment:
| Q |
108 |
ttaggaggggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttag |
207 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || || ||| |
|
|
| T |
7959702 |
ttaggaggggtgcctttttaaggtctatccaaatggtggagcctacatcataatttgttgctgtgggggtctgcgttcgcgcggccccttccagtcatag |
7959603 |
T |
|
| Q |
208 |
tttaaatatttttaagtt |
225 |
Q |
| |
|
||||||| |||| ||||| |
|
|
| T |
7959602 |
tttaaattttttgaagtt |
7959585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 43924105 - 43924059
Alignment:
| Q |
40 |
acttacctggatggggtcaatgggtgatcaagaaggcccatggcctag |
87 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43924105 |
acttacctgaatggggtcaatgg-tgatcaagaaggcccatggcctag |
43924059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 43924031 - 43923991
Alignment:
| Q |
126 |
taaggtctacccaagtggtggagcctacatcataatttgtt |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
43924031 |
taaggtctactcaagtggtggagcctacattataatttgtt |
43923991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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