View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14271_high_19 (Length: 301)

Name: NF14271_high_19
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14271_high_19
NF14271_high_19
[»] chr3 (4 HSPs)
chr3 (1-291)||(109139-109428)
chr3 (60-273)||(90400-90613)
chr3 (117-263)||(2708966-2709120)
chr3 (32-68)||(90330-90366)
[»] chr8 (2 HSPs)
chr8 (130-256)||(25936423-25936549)
chr8 (130-208)||(26105073-26105151)
[»] scaffold0685 (1 HSPs)
scaffold0685 (94-261)||(5922-6089)
[»] chr4 (2 HSPs)
chr4 (94-261)||(29550249-29550416)
chr4 (135-180)||(29556747-29556792)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 109139 - 109428
Alignment:
Q  1 ccgaaatcataggttaatggttactataaaaatgattcatcattctgtccatttctgtatttacatttttctaatatcgtcttcactttgttaactatgt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  109139 ccgaaatcataggttaatggttactataaaa-tgattcatcattctgtccatttctgtatttacatttttctaatatcgtcttcactttgttaactatgt 109237  T
Q  101 taccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  109238 taccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaacgagtttgggaattgaatatactcctttggaagtgagc 109337  T
Q  201 atcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatctccttgtttaggtttttgatgcctatgct 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  109338 atcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatctccttgtttaggtttttgatgcctatgct 109428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 60 - 273
Target Start/End: Original strand, 90400 - 90613
Alignment:
Q  60 tttacatttttctaatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaagg 159  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  90400 tttagatttttctaatatcgttttcactttgtcaactatgttaccaggtgtgcggacgataagccatatgtgcctatatatcaggtttccaaagaaaagg 90499  T
Q  160 caaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgat 259  Q
    | || || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |    
T  90500 cgaaaagcttgggacttgaatatactcctttggaagtgagcatcaaggagactgttgaaagtttgaaagaaaagaagttcgccaacctttaatttgtggt 90599  T
Q  260 atctccttgtttag 273  Q
    ||||||||||||||    
T  90600 atctccttgtttag 90613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 263
Target Start/End: Original strand, 2708966 - 2709120
Alignment:
Q  117 gataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatca--------agga 208  Q
    |||||||| ||  |||||||||||||| |||||||||||||||  ||||| |||||||||||||  |||| ||||||||| |||||||        ||||    
T  2708966 gataagccgtacatgcctacatatcaggtttccaaagaaaaggtcaagagcttgggaattgaattaactcttttggaagtcagcatcaaggagagtagga 2709065  T
Q  209 aactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatct 263  Q
     ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  2709066 gactgtggaaaatttgaaagaaaagaagttcgccaacttttaatttgtgatatct 2709120  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 90330 - 90366
Alignment:
Q  32 atgattcatcattctgtccatttctgtatttacattt 68  Q
    ||||||||||||||||||| |||||||||||||||||    
T  90330 atgattcatcattctgtccgtttctgtatttacattt 90366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 25936423 - 25936549
Alignment:
Q  130 tgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaaga 229  Q
    |||| ||||||||| |||| || |||||||| |||||||||||||| || | |||| |||||||||| | | ||||||| ||||| ||||| || | |||    
T  25936423 tgccaacatatcagatttctaaggaaaaggctaagagtttgggaatcgagtttacttctttggaagtcaccctcaaggagactgtggaaagcttcagaga 25936522  T
Q  230 aaagaagttcgtcaacttttaatttgt 256  Q
     || ||| |||||||||||||||||||    
T  25936523 gaaaaagatcgtcaacttttaatttgt 25936549  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 26105073 - 26105151
Alignment:
Q  130 tgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaagga 208  Q
    |||| ||||||||| ||||||| |||||||| ||||| || ||||| || | ||||||||||||| | ||| |||||||    
T  26105073 tgccaacatatcagatttccaaggaaaaggccaagagctttggaatcgagtttactcctttggaaatcagcctcaagga 26105151  T

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Target: scaffold0685 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 5922 - 6089
Alignment:
Q  94 actatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttgga 193  Q
    ||||||||| |||||| || ||||||||||| |   |||  |||| |||| |||||||||||||||||||||  || ||| |||||| || |||  ||||    
T  5922 actatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaatttattcccctgga 6021  T
Q  194 agtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatat 261  Q
    ||||||| | |  || |  || |||||||| ||||| || ||||| |  ||||| |||||||||||||    
T  6022 agtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatttgtgatat 6089  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 29550249 - 29550416
Alignment:
Q  94 actatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttgga 193  Q
    ||||||||| |||||| || ||||||||||| |   |||  |||| |||| |||||||||||||||||||||  || ||| |||||| || |||  ||||    
T  29550249 actatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaatttattcccctgga 29550348  T
Q  194 agtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatat 261  Q
    ||||||| | |  || |  || |||||||| ||||| || ||||| |  ||||| |||||||||||||    
T  29550349 agtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatttgtgatat 29550416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 29556747 - 29556792
Alignment:
Q  135 acatatcagttttccaaagaaaaggcaaagagtttgggaattgaat 180  Q
    |||| |||| |||||||||||||||||||||  |||||||||||||    
T  29556747 acatttcagatttccaaagaaaaggcaaagacgttgggaattgaat 29556792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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