View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_high_2 (Length: 624)
Name: NF14271_high_2
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 14 - 607
Target Start/End: Original strand, 54218267 - 54218856
Alignment:
| Q |
14 |
caaagggaattattgaagttatctaagagaatcttggggccaaaccaagatacatgatgcaagaaggggcgttatacatgtaaaaccattgatgattcaa |
113 |
Q |
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| T |
54218267 |
caaagggaattattgaagttatctaagagaatcttggggccaaaccaagatacatgatgcgagaaggggcgttatacatgtaaaaccattgatgattcaa |
54218366 |
T |
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| Q |
114 |
ttttgattaaaggactttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacga |
213 |
Q |
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| T |
54218367 |
ttttgattaaaggactttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacga |
54218466 |
T |
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| Q |
214 |
tcaagtttttgatctgcgttccttacaataacttgacattcctcgtaggacaactagctacatatatattcctttgttttagcctttagtaggaggaagg |
313 |
Q |
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| T |
54218467 |
tcaagtttttgatctgtgttccttacaataacttgacattcttcgtaggacaactagctacatatatatt-------tttagcctttagtaggaggaagg |
54218559 |
T |
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| Q |
314 |
gagatcttttgaaagacatgttatagaaatatctttgtcaatcttcgttgccgtcaaggtgcaagaac---cattcttaacatataaatggtttcatttc |
410 |
Q |
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| T |
54218560 |
gagatcttttgaaagacatgttatagaaatatctttgtcaatcttcgttgccgtcaaggtgcaagaacaaccattcttaacatataaatagtttcatttc |
54218659 |
T |
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| Q |
411 |
cagcaacaattgatcatttaccaatcaaacagaacatggtccgtacgttttcgattctatcaaatacatgggaaaattaaataacaattgcaaaggaaaa |
510 |
Q |
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| T |
54218660 |
cagcaacaattgatcatttatcaatcaaacagaacatggtccgtacgttttcgattctatcaaatacatgggaaaattaaataacaattgcaaaggaaaa |
54218759 |
T |
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| Q |
511 |
ttttgtcaaaacatagaattcttgcatagtagaaaaactttttcttgtgcatctcaaagtaatttgcactcctgtgcttgagttgcatggaatcata |
607 |
Q |
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| T |
54218760 |
ttttgtcaaaacatagaattcttgcatagtagaaaaactttttcttgtgcatctcaaagtagtttgcactcctgtgcttgagttgcatggaatcata |
54218856 |
T |
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