View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_high_24 (Length: 266)
Name: NF14271_high_24
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 3878486 - 3878264
Alignment:
| Q |
23 |
accttagcaaagacattgccttcatgaccagcaaatcaatagttggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaac |
122 |
Q |
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| T |
3878486 |
accttagcaaagacattgccttcatgaccagcaaatcaatagtaggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaac |
3878387 |
T |
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| Q |
123 |
tgtgattatacataaaactttaaataagcacatttataaaactaaaaacttttataaagaatacaacatatactcaagctcgcattgttcttcagatatg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3878386 |
tgtgattatacataaaactttaaataagcacatttataaaactaaaaacttttataaagaatacaacatatactcaagctcacattgttcttcagatatg |
3878287 |
T |
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| Q |
223 |
ttccgattttcaaaattcaaatt |
245 |
Q |
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| T |
3878286 |
ttccgattttcaaaattcaaatt |
3878264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 3864472 - 3864345
Alignment:
| Q |
30 |
caaagacattgccttcatgaccagcaaatcaatagttggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaactgtgatt |
129 |
Q |
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|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||| |
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| T |
3864472 |
caaagagattgccttcatgaccagcaaataaatagaaggtcctgatatgctcaatgctgtagcattcggataacgcctacacatgtcctcaactgtaatt |
3864373 |
T |
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| Q |
130 |
atacataaaactttaaataagcacattt |
157 |
Q |
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| T |
3864372 |
acacattgaactttgaataagtacattt |
3864345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 3864241 - 3864156
Alignment:
| Q |
158 |
ataaaactaaaaacttttataaagaatacaacatatactcaagctcgcattgttcttcagatatgttccgattttcaaaattcaaa |
243 |
Q |
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|||||||||||||| || ||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
3864241 |
ataaaactaaaaacattcataaataaaacaacatatactcaagctcacattgttcttcagatatgtcccgattttcaaaattcaaa |
3864156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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