View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_high_3 (Length: 570)
Name: NF14271_high_3
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 93 - 561
Target Start/End: Original strand, 17519748 - 17520216
Alignment:
| Q |
93 |
acttctatgtttttgcaggtgaaatagctcgtattggtgcagggtatgtatcttcttcttgttcaactttcattcacttgaagctatggttgaagataac |
192 |
Q |
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| T |
17519748 |
acttccatgtttttgtaggcgagatagctcgtattggtgcagggtacgtatcttctttttgttcaactttcattcacttgaagttataattgaacattac |
17519847 |
T |
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| Q |
193 |
cagctaactattgtagttgatgtttacataggatttttcttcttttacaacttgtgagtgtgatccattttatcatttggtggaataagtattggactcc |
292 |
Q |
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| T |
17519848 |
cagctaactattgtagttgatgtttacataggatttttctccttttacaacttgtgagtgtgatccattttatcatttggtggaataagtattggactcc |
17519947 |
T |
|
| Q |
293 |
agccgaagaaacgaaagagaggtatatattattattgctgcaaggagtaatcataaaatctaaggcataacagtgtgcgcaattcttaacatcaagacca |
392 |
Q |
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| T |
17519948 |
agacgaagaaacgaaaaagaggtacatattattattgctgcaaggaataatcataaaatctaaggcataacagtgtgcgcaattcttaacatcaagacca |
17520047 |
T |
|
| Q |
393 |
ttttgttatcccttcaatagccttcatagaaatgtctgcattttggtacaggtgctcctttggactacttgtgtcaacattgttttatattggtgctata |
492 |
Q |
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| T |
17520048 |
ttttgttatcccttcaatagccttcacagaaatgtctgcattttggtacaggtgctcctttggactacttgtgtcaacattgttttatattggtgctata |
17520147 |
T |
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| Q |
493 |
tgtgggattgtgtatatgtacagatcatacgcttcaagagcttcatgttctctcaatatatttttcatc |
561 |
Q |
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| T |
17520148 |
tgtgggattgtgtatatgtacagatcatacgcttcaagagcttcatgttctctcaatatatttttcatc |
17520216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 17519494 - 17519552
Alignment:
| Q |
18 |
cacagtgcattaggatcttggttatagttggtcaattttgttttgaaaaatggttctta |
76 |
Q |
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| T |
17519494 |
cacagtgcattaggatcttggttatagttggtcaattttgttctgagaaatggttctta |
17519552 |
T |
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