View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14271_high_30 (Length: 236)
Name: NF14271_high_30
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3764779 - 3764559
Alignment:
| Q |
1 |
caaacaaacaaccgaaatcgatttatttgtgatttttaaacaaatcaaactcaagctaaaaagaacttttaaaacaaatttcgatcgaatttaaagttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3764779 |
caaacaaacaaccgaaatcgatttatttgtgatttttaaataaatcaaactcaagctaaaaagaacttttaaaataaatttcgatcgaatttaaagttga |
3764680 |
T |
|
| Q |
101 |
ctcagatcttatcgagtctactcgactcatttttcacgttaaagggaactaaatttttggctggaatctaaaataaaaacaaatatgacttgttagagac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3764679 |
gtcagatcttatcgagtctactcgactcattttccacgttaaagtgaactaaatttttggctggaatctaaaataaaaacaaatatgacttgttagagac |
3764580 |
T |
|
| Q |
201 |
atgacctgttaccgtaatttc |
221 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
3764579 |
atgacttgttaccgtaatttc |
3764559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 18581975 - 18582012
Alignment:
| Q |
23 |
ttatttgtgatttttaaacaaatcaaactcaagctaaa |
60 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
18581975 |
ttatttgtgatgtttaaacaagtcaaactcaagctaaa |
18582012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University