View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14271_high_31 (Length: 234)
Name: NF14271_high_31
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 40899601 - 40899798
Alignment:
| Q |
18 |
gacaggggtgttatgatcaatgacaaccagtcaagattctctattaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40899601 |
gacaggggtgttatgatcaatgacaaccagtcaagattctctattaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactg |
40899700 |
T |
|
| Q |
118 |
tggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
40899701 |
tggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattctcagctgtggaatatgcacaggtataggagattcc |
40899798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 40904167 - 40904364
Alignment:
| Q |
18 |
gacaggggtgttatgatcaatgacaaccagtcaagattctctattaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40904167 |
gacaggggtgttatgatcaatgacaaccagtcaagattctctcttaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactg |
40904266 |
T |
|
| Q |
118 |
tggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattcc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40904267 |
tggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagctgtggaatatgcacaggtataggagattcc |
40904364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 40880667 - 40880864
Alignment:
| Q |
18 |
gacaggggtgttatgatcaatgacaaccagtcaagattctctattaagggacagcccattcaccatttcgtcggtacatctacattcagcgagtacactg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||| |
|
|
| T |
40880667 |
gacaggggtgttatgatcaatgacaatcagtcaagattctctattaagggacagcccattcaccattttgtcggtacatcgacattcagtgaatacactg |
40880766 |
T |
|
| Q |
118 |
tggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagttgtggaatatgcacaggtataggagattcc |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
40880767 |
tggttcatgctggatgtgttgcaaagatcaaccctgatgcacctcttgataaagtttgtattctcagctgtggaatatgcacaggtataggagattcc |
40880864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University