View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_high_7 (Length: 404)
Name: NF14271_high_7
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 36939702 - 36939333
Alignment:
| Q |
17 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939702 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
36939603 |
T |
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| Q |
117 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939602 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
36939503 |
T |
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| Q |
217 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939502 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
36939403 |
T |
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| Q |
317 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttg |
386 |
Q |
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| T |
36939402 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttg |
36939333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 36941422 - 36941785
Alignment:
| Q |
17 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
116 |
Q |
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|||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
36941422 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
36941521 |
T |
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| Q |
117 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
216 |
Q |
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||||||| |||||||| | |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
36941522 |
aaacccattccacaatgtttatttcattttcttgagcattaa------ttattggttttcttccacaagctatctctaaagcaacaattccaaaactata |
36941615 |
T |
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| Q |
217 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
316 |
Q |
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||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
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| T |
36941616 |
cacatcggtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatga |
36941715 |
T |
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| Q |
317 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
36941716 |
tccacaaaccttgctaaaccgaaatctccaagttttgcgttaaattctgaatccaacatgatgttacttg |
36941785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
185 |
gctatctctaaagcaacaataccaaaactatacacgtctgtttctttactagctcttcct |
244 |
Q |
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|||| ||| ||||||||||| ||||||||||||| ||| | |||||||||||| |||||| |
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| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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