View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_1 (Length: 715)
Name: NF14271_low_1
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 14771239 - 14770890
Alignment:
| Q |
1 |
aacaagtatcatctagcctatgttccgaatgtgtgtgtcaaattagtaaaacctaaaaaatcaatcacaagttgaagcaacaatccacccactttagcat |
100 |
Q |
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| T |
14771239 |
aacaagtatcatctagcctatgttccgaatgtgtctgtcaaattaataaaacctaaaaaatcaatcacaagttgaagcaacaatccacccactttagcat |
14771140 |
T |
|
| Q |
101 |
atcttatattatgtct---------------cttaaactcattcagaaagccaaacccaatgagacagagattatgggaatgatcccaagccacgcatat |
185 |
Q |
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| T |
14771139 |
atcttatattatgtcttttaatcaatccaaacttaaactcattcagaaagcaaaacccaatgagacagagattatgggaatgatcctaagccac--atat |
14771042 |
T |
|
| Q |
186 |
aaacgacataaatttgaaactcgataaaatttgaatcagtttaaaactcgactcaagtttgtcacaaattttgaagactcaaactcgactcaatcaattc |
285 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14771041 |
aaacgacataagtttgaaactcgataaaatttgaatcagtttaaaactcgactcaagtttgtcacaaattttgaagactcaaactcgactcaatcaattc |
14770942 |
T |
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| Q |
286 |
aagctcacaaaaattttggttcatcttaatagcttgaatcaaatgaaccaaa |
337 |
Q |
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| T |
14770941 |
aagctcacaaaaaatttggttcatcttaatagctcgaattaaatgaaacaaa |
14770890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 336 - 546
Target Start/End: Complemental strand, 14769671 - 14769459
Alignment:
| Q |
336 |
aaatttcttttttctgtgcccctaatgaagctccagtacttctcattccaaaccgaacactataacaaaaattataacacgagcatttcat-ccacatca |
434 |
Q |
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| T |
14769671 |
aaatttcttttttctgtgccactaatgaagctccagtacttctcattccaatccgaacactataacaaaaattataacacgagcatttcattccacatca |
14769572 |
T |
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| Q |
435 |
gtgcagattttt-aattcaaaaggtgaaacttgtaatccagttttctccgtcataatatgtacaggaaattatgatagtttttacgtacaggagaggctt |
533 |
Q |
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| T |
14769571 |
gtgcagattttttaattcaaaagatgaaacttgtaatccagttttctccatcataatatgtacaggaaattatgatagtttttacgtacaggagaggctt |
14769472 |
T |
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| Q |
534 |
gatccttccctta |
546 |
Q |
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| T |
14769471 |
gatccttccctta |
14769459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 617 - 709
Target Start/End: Complemental strand, 14769379 - 14769287
Alignment:
| Q |
617 |
atggaatcaatgaaggtttggtggggaatggtgatagagtgagagcacaggttagaagtgtaaatgaggagcgaaaacgtgttcctttgcttc |
709 |
Q |
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| T |
14769379 |
atggaatcaatgaaggtttggtggggaatggtgatagagtgagagcacaggttaggagtgtaaatgaggagcgaaaacgtgttcctttgcttc |
14769287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 30752041 - 30752104
Alignment:
| Q |
17 |
cctatgttccgaatgtgtgtgtcaaattagtaaaa-cctaaaaaatcaatcacaagttgaagca |
79 |
Q |
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| T |
30752041 |
cctatgttccaaacgtgtctgtcaaattagtaaaacccaaaaaaatcaataacatgttgaagca |
30752104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 47648706 - 47648827
Alignment:
| Q |
1 |
aacaagtatcatctagcctatgttccgaatgtgtgtgtcaaattagtaaaacctaaaaaatcaatcacaagttgaagcaacaatccacccactttagcat |
100 |
Q |
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||||| |||||||||||||||||| | ||||||| ||||||||||||||||| |||||| |||| ||||||||||||| |||||||| || ||||||| |
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| T |
47648706 |
aacaaatatcatctagcctatgtttcaaatgtgtcagtcaaattagtaaaacccaaaaaa-caataacaagttgaagcattaatccaccaacattagcat |
47648804 |
T |
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| Q |
101 |
atctt-atattatgtctcttaaa |
122 |
Q |
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| T |
47648805 |
atattcatactgtgtctcttaaa |
47648827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 16179247 - 16179334
Alignment:
| Q |
14 |
tagcctatgttccgaatgtgtgtgtcaaattagtaaaacctaaaaaatcaatcacaagttgaagcaacaatccacccactttagcatat |
102 |
Q |
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| T |
16179247 |
tagcatatgtttcaaatgtgtctgtcaaattagcaaatcccaaaaaa-caataacaagttgaagcattaatccaccaactttagcatat |
16179334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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