View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14271_low_10 (Length: 391)

Name: NF14271_low_10
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14271_low_10
NF14271_low_10
[»] chr5 (4 HSPs)
chr5 (254-375)||(40797519-40797640)
chr5 (95-231)||(40797405-40797528)
chr5 (1-66)||(40797313-40797382)
chr5 (254-303)||(41612842-41612891)
[»] chr6 (5 HSPs)
chr6 (271-375)||(8848976-8849080)
chr6 (254-299)||(23158121-23158166)
chr6 (254-299)||(18763106-18763151)
chr6 (254-299)||(20014730-20014775)
chr6 (254-305)||(31575107-31575158)
[»] chr7 (7 HSPs)
chr7 (254-375)||(39700514-39700635)
chr7 (174-219)||(6015836-6015881)
chr7 (254-305)||(27260683-27260734)
chr7 (254-305)||(45623325-45623376)
chr7 (254-299)||(9334209-9334255)
chr7 (218-251)||(45623307-45623340)
chr7 (254-305)||(26643043-26643095)
[»] scaffold0022 (1 HSPs)
scaffold0022 (254-375)||(152842-152963)
[»] chr4 (4 HSPs)
chr4 (254-355)||(43591268-43591368)
chr4 (254-305)||(581746-581797)
chr4 (254-303)||(581439-581488)
chr4 (218-251)||(43592211-43592244)
[»] chr2 (2 HSPs)
chr2 (258-326)||(28381778-28381846)
chr2 (177-217)||(5668242-5668282)
[»] chr8 (2 HSPs)
chr8 (254-317)||(22928113-22928177)
chr8 (184-217)||(11405927-11405960)
[»] chr3 (2 HSPs)
chr3 (259-310)||(22159166-22159218)
chr3 (254-305)||(6509911-6509962)
[»] chr1 (2 HSPs)
chr1 (184-219)||(12252568-12252603)
chr1 (254-318)||(15718776-15718841)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 254 - 375
Target Start/End: Original strand, 40797519 - 40797640
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 353  Q
    |||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40797519 atacttattaataaagagaaaacttttatttagcgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 40797618  T
Q  354 actgaacatcagtttgaaaact 375  Q
    |||||||| |||||||||||||    
T  40797619 actgaacaacagtttgaaaact 40797640  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 40797405 - 40797528
Alignment:
Q  95 cctttcaaaaaaggtcaaatgctcaaacaccaacactaattaaactccttaaacaatagtacaaagaaagtaccagaacgatggattccgaaatttcaat 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |             || ||||||||||||||||||    
T  40797405 cctttcaaaaaaggtcaaatgctcaaacaccaacactaattaaactccttaaacaatagtatcagg-------------gacggattccgaaatttcaat 40797491  T
Q  195 aagtggggtcaaagttgtttatcatctatacctatta 231  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  40797492 aagtggggtcaaagtggtttatcatctatacttatta 40797528  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40797313 - 40797382
Alignment:
Q  1 caaaacaggaaaaatccaaaaaggcattttaaaattat-----aagtatccaatggaataaattaataacc 66  Q
    ||||||||||||| ||||||||||||||||||||| ||     ||||||||||||||||||||||||||||    
T  40797313 caaaacaggaaaa-tccaaaaaggcattttaaaataatcacataagtatccaatggaataaattaataacc 40797382  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 41612842 - 41612891
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttcttt 303  Q
    ||||||||||||||||  || ||||| |||||||||||||||||||||||    
T  41612842 atacctattaataaaggcaatactttggtttggtgtagcctattttcttt 41612891  T

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Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 8849080 - 8848976
Alignment:
Q  271 gaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaaactgaacatcagtttga 370  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8849080 gaaaacttttgtttggtgtagcctaatttctttcccaaattatccttctttttttatgagaatttcccaatttgccagttaaaactgaacaacagtttga 8848981  T
Q  371 aaact 375  Q
    |||||    
T  8848980 aaact 8848976  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 23158121 - 23158166
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctatttt 299  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  23158121 atacctattaataaagacaatacttttgtttggtgtagcctatttt 23158166  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 18763106 - 18763151
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctatttt 299  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||    
T  18763106 atacctattaataaagacagtacttttgtttggtgtagcctatttt 18763151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 20014730 - 20014775
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctatttt 299  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  20014730 atacctattaataaaggcaatacttttgtttggtgtagcctatttt 20014775  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 31575158 - 31575107
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 305  Q
    ||||||||||||||||  || ||||| ||||| |||||||||||||||||||    
T  31575158 atacctattaataaaggcaatactttggtttgatgtagcctattttctttcc 31575107  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 254 - 375
Target Start/End: Original strand, 39700514 - 39700635
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 353  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || |||    
T  39700514 atacctattaataaaggtaaaacttttgtttggtgtagcctattttctttcctaaattacccttctttttttatgagaatttcccaatttgcccgtcaaa 39700613  T
Q  354 actgaacatcagtttgaaaact 375  Q
    | |||| | ||||||| |||||    
T  39700614 attgaaaaacagtttggaaact 39700635  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 6015881 - 6015836
Alignment:
Q  174 gatggattccgaaatttcaataagtggggtcaaagttgtttatcat 219  Q
    ||||||| | |||||||||||||||||||||||| |||||||||||    
T  6015881 gatggatccagaaatttcaataagtggggtcaaaattgtttatcat 6015836  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 27260734 - 27260683
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 305  Q
    |||||||||||||||| ||||||||   |||||||||||||||||| |||||    
T  27260734 atacctattaataaagggaaaacttagttttggtgtagcctattttttttcc 27260683  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 45623325 - 45623376
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 305  Q
    ||||||||||||||||  || |||||  ||||||||||||||||||||||||    
T  45623325 atacctattaataaaggcaatactttcttttggtgtagcctattttctttcc 45623376  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 9334255 - 9334209
Alignment:
Q  254 atacctattaataaagagaaaac-ttttgtttggtgtagcctatttt 299  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||    
T  9334255 atacctattaataaaggcaaaacattttgtttggtgtagcctatttt 9334209  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 45623307 - 45623340
Alignment:
Q  218 atctatacctattattctatacctattaataaag 251  Q
    |||||||||||||| |||||||||||||||||||    
T  45623307 atctatacctattaatctatacctattaataaag 45623340  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 26643043 - 26643095
Alignment:
Q  254 atacctattaataaagagaaaacttttgttt-ggtgtagcctattttctttcc 305  Q
    ||||||||||||||||  || |||||| ||| |||||||||||||||||||||    
T  26643043 atacctattaataaaggcaatacttttcttttggtgtagcctattttctttcc 26643095  T

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Target: scaffold0022 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 254 - 375
Target Start/End: Complemental strand, 152963 - 152842
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 353  Q
    ||||||||||||||||  ||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  152963 atacctattaataaaggcaaaacatttgtttcgtgtagcctattttctttcctaaattacccttctttttttatgagaatttcccaatttgcccgttaaa 152864  T
Q  354 actgaacatcagtttgaaaact 375  Q
    | |||| | ||||||| |||||    
T  152863 attgaaaaacagtttggaaact 152842  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 43591268 - 43591368
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 353  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  43591268 atacctattaataaagggaaaacttttgtttggtgtagcctattttctttcccaaattacccttctt-ttttatgagaattttccaatatgccaattaaa 43591366  T
Q  354 ac 355  Q
    ||    
T  43591367 ac 43591368  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 581746 - 581797
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 305  Q
    ||||||||||||||||| || |||||  ||||||||||||||||||||||||    
T  581746 atacctattaataaagacaatactttaatttggtgtagcctattttctttcc 581797  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 581439 - 581488
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttcttt 303  Q
    ||||||||||||||||  || ||||| |||||||||||||||||||||||    
T  581439 atacctattaataaaggcaatactttagtttggtgtagcctattttcttt 581488  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 43592211 - 43592244
Alignment:
Q  218 atctatacctattattctatacctattaataaag 251  Q
    |||||||||||||| |||||||||||||||||||    
T  43592211 atctatacctattaatctatacctattaataaag 43592244  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 28381778 - 28381846
Alignment:
Q  258 ctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttctttta 326  Q
    |||||||||||| ||||||||   |||||||||||||| |||||||||||  |||||||| ||||||||    
T  28381778 ctattaataaagggaaaacttagttttggtgtagcctactttctttcccattttacccttattctttta 28381846  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 5668282 - 5668242
Alignment:
Q  177 ggattccgaaatttcaataagtggggtcaaagttgtttatc 217  Q
    |||||| |||||||||||||||||||||||  |||||||||    
T  5668282 ggattcagaaatttcaataagtggggtcaatattgtttatc 5668242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 22928113 - 22928177
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctatttt-ctttcccaaattaccctt 317  Q
    ||||||||||||||||| ||||| | ||||||||||||||| |||| | |||| |||||||||||    
T  22928113 atacctattaataaagacaaaacatgtgtttggtgtagccttttttccattccaaaattaccctt 22928177  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 11405960 - 11405927
Alignment:
Q  184 gaaatttcaataagtggggtcaaagttgtttatc 217  Q
    ||||||||||||||||||||||||||| ||||||    
T  11405960 gaaatttcaataagtggggtcaaagttatttatc 11405927  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 22159218 - 22159166
Alignment:
Q  259 tattaataaagagaaaac-ttttgtttggtgtagcctattttctttcccaaat 310  Q
    |||||||||||  ||||| ||||||||||||||||||||||| ||||||||||    
T  22159218 tattaataaaggcaaaacattttgtttggtgtagcctattttttttcccaaat 22159166  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 6509962 - 6509911
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 305  Q
    ||||||||||||||||  || ||||| ||||||| |||||||||||||||||    
T  6509962 atacctattaataaagccaatactttggtttggtatagcctattttctttcc 6509911  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 12252603 - 12252568
Alignment:
Q  184 gaaatttcaataagtggggtcaaagttgtttatcat 219  Q
    |||||||||||||||||||||||| |||||||||||    
T  12252603 gaaatttcaataagtggggtcaaaattgtttatcat 12252568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 15718776 - 15718841
Alignment:
Q  254 atacctattaataaagagaaaacttttgtttggtgtagcctattttct-ttcccaaattacccttc 318  Q
    ||||||||||||||||  || || ||  ||||||||||| |||||||| |||||||||||||||||    
T  15718776 atacctattaataaaggcaatacattactttggtgtagcatattttctattcccaaattacccttc 15718841  T

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