View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14271_low_11 (Length: 366)

Name: NF14271_low_11
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14271_low_11
NF14271_low_11
[»] chr2 (3 HSPs)
chr2 (65-343)||(37316428-37316701)
chr2 (18-73)||(37317147-37317202)
chr2 (311-347)||(32361014-32361050)
[»] chr5 (3 HSPs)
chr5 (114-177)||(42871139-42871203)
chr5 (315-346)||(13661957-13661988)
chr5 (312-347)||(21945007-21945042)
[»] chr4 (5 HSPs)
chr4 (310-346)||(292259-292295)
chr4 (315-346)||(33108679-33108710)
chr4 (314-347)||(789678-789711)
chr4 (309-346)||(7769081-7769118)
chr4 (314-347)||(43944512-43944545)
[»] chr8 (8 HSPs)
chr8 (312-347)||(2490335-2490370)
chr8 (312-347)||(4537890-4537925)
chr8 (312-347)||(27988645-27988680)
chr8 (312-347)||(28045947-28045982)
chr8 (312-347)||(29566705-29566740)
chr8 (314-347)||(168471-168504)
chr8 (313-346)||(15451216-15451249)
chr8 (311-347)||(16394206-16394242)
[»] chr7 (3 HSPs)
chr7 (312-347)||(30924137-30924172)
chr7 (315-348)||(6097486-6097519)
chr7 (315-348)||(38128441-38128474)
[»] chr6 (3 HSPs)
chr6 (312-347)||(21878493-21878528)
chr6 (315-346)||(23402287-23402318)
chr6 (312-347)||(34712272-34712307)
[»] chr3 (1 HSPs)
chr3 (315-346)||(46352783-46352814)
[»] chr1 (5 HSPs)
chr1 (312-347)||(5694326-5694361)
chr1 (312-347)||(13961217-13961252)
chr1 (310-348)||(38595756-38595794)
chr1 (314-347)||(18043167-18043200)
chr1 (314-347)||(29210418-29210451)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 65 - 343
Target Start/End: Complemental strand, 37316701 - 37316428
Alignment:
Q  65 ttaattaaataggataaatttaggctctaaatatgtgatatgtgttgtcattactccctccatcctaccatgagtgatccatttgtaaaaagaattgtcc 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  37316701 ttaattaaataggataaatttaggctctaaatatgtgatatgtgttgtcattactccctctattctaccatgagtgatccatttgtaaaaagaattgtcc 37316602  T
Q  165 aaaaatgagtgactgtccccttttaattttcaatgcaatagtaattnnnnnnnggaaaatgctaatcggtgctcccaatacattggttaaggatgtcaaa 264  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||       || ||||||||| || |||| |||| |||||||||||||||     |    
T  37316601 aaaaatgagtgagtgtctcctttcaattttcaatgcaatagtaattaaaaaaagggaaatgctaaccgctgcttccaagacattggttaaggat-----a 37316507  T
Q  265 aaatggttactattaccataaaaggaaatannnnnnnnnnnnnnggcatccttaacccgtgccccggaggcaccggtta 343  Q
    ||| ||||||||||||||||||||||||||              ||||||||||||| |||||||||||||||||||||    
T  37316506 aaaaggttactattaccataaaaggaaatatttttgacttttttggcatccttaaccagtgccccggaggcaccggtta 37316428  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 37317202 - 37317147
Alignment:
Q  18 tacttttttagcagcaaagttaggttcaaactcttcaaaaagtgtatttaattaaa 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37317202 tacttttttagcagcaaagttaggttcaaactcttcaaaaagtgtatttaattaaa 37317147  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 32361014 - 32361050
Alignment:
Q  311 catccttaacccgtgccccggaggcaccggttagcat 347  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  32361014 catccttaaccagtgccccgggggcaccggttagcat 32361050  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 42871203 - 42871139
Alignment:
Q  114 attactccctccatcctaccatgagtgatccatttgtaaa-aagaattgtccaaaaatgagtgac 177  Q
    |||||||||||||||| || |||||||| ||||||||||| || | |||||| ||||||||||||    
T  42871203 attactccctccatcccacaatgagtgacccatttgtaaataaaatttgtcccaaaatgagtgac 42871139  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Original strand, 13661957 - 13661988
Alignment:
Q  315 cttaacccgtgccccggaggcaccggttagca 346  Q
    ||||||||||||||||||||||||||||||||    
T  13661957 cttaacccgtgccccggaggcaccggttagca 13661988  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 21945007 - 21945042
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||| |||||||||||||||||||||||||    
T  21945007 atccttaaccagtgccccggaggcaccggttagcat 21945042  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 292259 - 292295
Alignment:
Q  310 gcatccttaacccgtgccccggaggcaccggttagca 346  Q
    |||| ||||||||||||||||||||||||||||||||    
T  292259 gcatgcttaacccgtgccccggaggcaccggttagca 292295  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Complemental strand, 33108710 - 33108679
Alignment:
Q  315 cttaacccgtgccccggaggcaccggttagca 346  Q
    ||||||||||||||||||||||||||||||||    
T  33108710 cttaacccgtgccccggaggcaccggttagca 33108679  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 789678 - 789711
Alignment:
Q  314 ccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||||||||||| |||||||||||||||    
T  789678 ccttaacccgtgccccgggggcaccggttagcat 789711  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 7769081 - 7769118
Alignment:
Q  309 ggcatccttaacccgtgccccggaggcaccggttagca 346  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  7769081 ggcatacttaacccgtgccccgggggcaccggttagca 7769118  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 43944545 - 43944512
Alignment:
Q  314 ccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||| |||||||||||||||||||||||||    
T  43944545 ccttaaccagtgccccggaggcaccggttagcat 43944512  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 2490335 - 2490370
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||| |||||||||||||||||||||||||    
T  2490335 atccttaacctgtgccccggaggcaccggttagcat 2490370  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 4537890 - 4537925
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||| |||||||||||||||||||||||||    
T  4537890 atccttaaccagtgccccggaggcaccggttagcat 4537925  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 27988645 - 27988680
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||| |||||||||||||||||||||||||    
T  27988645 atccttaaccagtgccccggaggcaccggttagcat 27988680  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 28045947 - 28045982
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||| |||||||||||||||||||||||||    
T  28045947 atccttaaccagtgccccggaggcaccggttagcat 28045982  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 29566740 - 29566705
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||||||||||||| |||||||||||||||    
T  29566740 atccttaacccgtgccccgggggcaccggttagcat 29566705  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 168504 - 168471
Alignment:
Q  314 ccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||| |||||||||||||||||||||||||    
T  168504 ccttaaccagtgccccggaggcaccggttagcat 168471  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 15451216 - 15451249
Alignment:
Q  313 tccttaacccgtgccccggaggcaccggttagca 346  Q
    ||||||||| ||||||||||||||||||||||||    
T  15451216 tccttaaccagtgccccggaggcaccggttagca 15451249  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 16394206 - 16394242
Alignment:
Q  311 catccttaacccgtgccccggaggcaccggttagcat 347  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  16394206 catccttaaccagtgccccgggggcaccggttagcat 16394242  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 30924137 - 30924172
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||||||||||||| |||||||||||||||    
T  30924137 atccttaacccgtgccccgggggcaccggttagcat 30924172  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 6097486 - 6097519
Alignment:
Q  315 cttaacccgtgccccggaggcaccggttagcatg 348  Q
    ||||||||||||||||||||||| ||||||||||    
T  6097486 cttaacccgtgccccggaggcactggttagcatg 6097519  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 38128441 - 38128474
Alignment:
Q  315 cttaacccgtgccccggaggcaccggttagcatg 348  Q
    ||||||| ||||||||||||||||||||||||||    
T  38128441 cttaaccagtgccccggaggcaccggttagcatg 38128474  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 21878493 - 21878528
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21878493 atccttaacccgtgcccgggaggcaccggttagcat 21878528  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Original strand, 23402287 - 23402318
Alignment:
Q  315 cttaacccgtgccccggaggcaccggttagca 346  Q
    ||||||||||||||||||||||||||||||||    
T  23402287 cttaacccgtgccccggaggcaccggttagca 23402318  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 34712272 - 34712307
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||| |||||||||||||||||||||||||    
T  34712272 atccttaaccagtgccccggaggcaccggttagcat 34712307  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Original strand, 46352783 - 46352814
Alignment:
Q  315 cttaacccgtgccccggaggcaccggttagca 346  Q
    ||||||||||||||||||||||||||||||||    
T  46352783 cttaacccgtgccccggaggcaccggttagca 46352814  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 5694361 - 5694326
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||| |||||||||||||||||||||||||    
T  5694361 atccttaaccagtgccccggaggcaccggttagcat 5694326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 13961252 - 13961217
Alignment:
Q  312 atccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||||||||||||||| |||||||||||||||    
T  13961252 atccttaacccgtgccccgggggcaccggttagcat 13961217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 38595794 - 38595756
Alignment:
Q  310 gcatccttaacccgtgccccggaggcaccggttagcatg 348  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  38595794 gcatgcttaaccagtgccccggaggcaccggttagcatg 38595756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 18043200 - 18043167
Alignment:
Q  314 ccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||| |||||||||||||||||||||||||    
T  18043200 ccttaaccagtgccccggaggcaccggttagcat 18043167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 29210451 - 29210418
Alignment:
Q  314 ccttaacccgtgccccggaggcaccggttagcat 347  Q
    |||||||| |||||||||||||||||||||||||    
T  29210451 ccttaaccagtgccccggaggcaccggttagcat 29210418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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