View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_14 (Length: 363)
Name: NF14271_low_14
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 2487194 - 2487520
Alignment:
| Q |
1 |
ttgcttcggttataggattttcaatttcatgagatatatgtattctaggtgttgcttgttagcactttttgatagagtctctataaagaaactttgcagt |
100 |
Q |
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| T |
2487194 |
ttgcttcggttataggattttcaatttcatgagatatatgtattctaggtgttgcttgttagcactttttgatagattctctataaagaaactttgcagt |
2487293 |
T |
|
| Q |
101 |
tcaatttttctgttttgctgttattactttcgcattcttgtcattatctccatggaaaaattcaagcataaatgcaaagaaattttctctgtgagagtga |
200 |
Q |
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| T |
2487294 |
tcaatttttctgttttgctgttattactttcgcattcttgtcattatctccatggaaaaattcaagcataaatgcaaagaaattttctctgtgagagtga |
2487393 |
T |
|
| Q |
201 |
aacttgttttatgtcaattctatttgcattaaatttattgttacaaataatagtagttgaatgcatagnnnnnnncgtgattgtaacatgattgtatgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2487394 |
aacttgttttatgtcaattctatttgcattaaatttattgttacaaataatagtagttgaatgcatagtttttttcgtgattgtaacatgattgtatgat |
2487493 |
T |
|
| Q |
301 |
tcttagtcacactttttgttgaacatg |
327 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
2487494 |
tcttagtcacactttttgttgaacatg |
2487520 |
T |
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