View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14271_low_15 (Length: 361)
Name: NF14271_low_15
Description: NF14271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14271_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 40698296 - 40698638
Alignment:
| Q |
1 |
ttgttgggtctcttattccgtccggtaatcatacacttctcagcattttatttgtataaatttccctgctaagtttctttnnnnnnnttaaacaattgaa |
100 |
Q |
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| T |
40698296 |
ttgttggggctcttattccgtccggtaatcatacacttctcaacatttcatgtgtataaatttccctgctaagtttcttaaaaaaaattaaacaattgaa |
40698395 |
T |
|
| Q |
101 |
taacgtggctaaaatgtgtatatggctgtatagatctttattttgatattttaaagtgtcacaattaggatgtaccnnnnnnnncagtgtcacaattagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40698396 |
taacgtggctaaaatgtgtatatggctgtatagatctttattttgatattttaaagtgtcacaattaggatgtaccaaaaaaaacagtgtcacaattagg |
40698495 |
T |
|
| Q |
201 |
gaaggtccacggtcctcttgaattgagaagattccttattccatatatctttcaaatgtggtgtaaactcaactctttaacttttgaatcatcaagtaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40698496 |
gaaggtccacggtcctcttgaattgagaagattccttattccatatatctttcaaatgtggtgtaaactcaactctttaacttttgaatcatcaagtaac |
40698595 |
T |
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| Q |
301 |
actttcagttctattaaaaattacagaaaataatttaaattgc |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40698596 |
actttcagttctattaaaaattacagaaaataatttaaattgc |
40698638 |
T |
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